Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

20736487 .. 20737032

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1121100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTTCGGAACAGGAAAGACAAGACCCCGAGAAGAGAAAGGAGCTGGACGAGAAGGCAAGGAGGGGAGAGACTGTCGTCCCCGGTGGTACTGGTGGCCATAGCCTCGAGGCTCAGGAGCACCTTGCTGAAGGGCGGAGCCGTGGAGGGCAGACGAGGAAGGAACAGATAGGGGAAGAGGGATACCATGAAATGGGAAAGAAAGGCGGGCTGAGCACCTCCGACAAGTCCGGAGGTGAGCGTGCTGCTGAGGAAGGCATCAAGATTGACGAGTCCAAGTACAAGACCAAGAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

100

Amino Acids

10.88

Weight (kDa)

6.33

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 70	8.6e-29	Small hydrophilic plant seed protein
LEA_5	PF00477	49 - 94	2.1e-20	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	2 cut(s)	136, 207
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	91, 281
AfiI	CCNNNNNNNGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	2 cut(s)	123, 218
Alw26I	GTCTC	1 cut(s)	65
Ama87I	CYCGRG	2 cut(s)	29, 107
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	29, 107
BalI	TGGCCA	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	123, 218
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	246
BlpI	GCTNAGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	2 cut(s)	29, 107
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	267
BoxI	GACNNNNGTC	1 cut(s)	77
Bpu10I	CCTNAGC	2 cut(s)	114, 249
Bpu1102I	GCTNAGC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	82, 142
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	82, 142
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	128, 203, 240
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	123, 218
BsiHKCI	CYCGRG	2 cut(s)	29, 107
BsiSI	CCGG	2 cut(s)	84, 231
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	2 cut(s)	29, 107
Bsp1286I	GDGCHC	2 cut(s)	123, 218
Bsp13I	TCCGGA	1 cut(s)	230
Bsp1720I	GCTNAGC	1 cut(s)	212
BspACI	CCGC	2 cut(s)	136, 207
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	3 cut(s)	127, 204, 241
BspEI	TCCGGA	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	82, 142
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	29, 171
BstC8I	GCNNGC	2 cut(s)	209, 243
BstDEI	CTNAG	3 cut(s)	114, 212, 249
BstDSI	CCRYGG	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	209, 243
Csp6I	GTAC	2 cut(s)	90, 280
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	5, 46, 99, 105, 113, 141, 211
CviKI_1	RGCY	7 cut(s)	5, 46, 99, 105, 113, 141, 211
CviQI	GTAC	2 cut(s)	90, 280
DdeI	CTNAG	3 cut(s)	114, 212, 249
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	29, 171
EarI	CTCTTC	2 cut(s)	29, 171
EciI	GGCGGA	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	29, 107
FaeI	CATG	1 cut(s)	191
FaiI	YATR	2 cut(s)	102, 189
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	187
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	84, 231
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	2 cut(s)	272, 292
HpaII	CCGG	2 cut(s)	84, 231
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	10, 223
Hpy188III	TCNNGA	3 cut(s)	116, 231, 262
HpyAV	CCTTC	4 cut(s)	49, 125, 154, 248
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	3 cut(s)	114, 212, 249
Hsp92II	CATG	1 cut(s)	191
Kpn2I	TCCGGA	1 cut(s)	230
LmnI	GCTCC	3 cut(s)	43, 118, 138
LpnPI	CCDG	5 cut(s)	32, 78, 97, 101, 244
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	267
MboII	GAAGA	2 cut(s)	46, 188
MhlI	GDGCHC	2 cut(s)	123, 218
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	9 cut(s)	57, 103, 116, 140, 150, 172, 227, 229, 244
Mox20I	TGGCCA	1 cut(s)	99
MroI	TCCGGA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	84, 231
MspR9I	CCNGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	84
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PshAI	GACNNNNGTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	107
RsaI	GTAC	2 cut(s)	91, 281
RsaNI	GTAC	2 cut(s)	90, 280
SatI	GCNGC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	123, 218
SetI	ASST	4 cut(s)	48, 126, 221, 238
SfaNI	GCATC	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	2 cut(s)	136, 207
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	108
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.