Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

26210801 .. 26211654

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G280200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCATCAGAGCAGGAAAGAAGTGACCCAAGCAGAAGAAAAGAACTAGACGAGAAGGCAAGGCAGGGAGAGGTTGTTGTCCCTGGTGGAACTGGTGGCAAGAGCCTCGAGGCTCAAGAGCACCTTGCTGAAGGGCGGAGCCGCGGAGGGCAGACAAGGAGGGAGCAGGTGGGTCATGAAGGGTACCGGGAGTTGGGCCACCGCGGCGGCGAGACTAGGAAGGAGCAGATAGGCCATGAAGGGTACCGTGAGATGGGGAAAAAAGGAGGGCTCAGCACCAAGGACAAGTCTGGAGGAGAGCGTGCTGCTGAGGAAGGCATCCCCATTGATGAGTCCAAGTACAAAACCAAGAGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

120

Amino Acids

13.1

Weight (kDa)

8.89

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
AbsI	CCTCGAGG	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	2 cut(s)	183, 243
AccB1I	GGYRCC	2 cut(s)	183, 243
AccII	CGCG	2 cut(s)	144, 204
AciI	CCGC	7 cut(s)	136, 142, 144, 202, 204, 207, 355
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	3 cut(s)	185, 245, 341
AfiI	CCNNNNNNNGG	2 cut(s)	193, 253
AjnI	CCWGG	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	196, 232
ApeKI	GCWGC	1 cut(s)	305
Asp718I	GGTACC	2 cut(s)	183, 243
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	107
BanI	GGYRCC	2 cut(s)	183, 243
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	47, 216
BfuAI	ACCTGC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	5 cut(s)	142, 205, 208, 306, 355
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	5 cut(s)	143, 206, 209, 307, 356
Bme1390I	CCNGG	2 cut(s)	84, 188
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	140, 185, 245
BmrFI	CCNGG	2 cut(s)	84, 188
BmsI	GCATC	2 cut(s)	14, 327
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	82, 142, 202, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 253
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	82, 142, 202, 279
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	193, 253
BseMII	CTCAG	2 cut(s)	286, 300
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	144, 204
BshFI	GGCC	2 cut(s)	198, 234
BshNI	GGYRCC	2 cut(s)	183, 243
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	193, 253
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	198, 234
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	123, 273
Bsp1720I	GCTNAGC	1 cut(s)	272
BspACI	CCGC	7 cut(s)	136, 142, 144, 202, 204, 207, 355
BspANI	GGCC	2 cut(s)	198, 234
BspCNI	CTCAG	2 cut(s)	285, 301
BspFNI	CGCG	2 cut(s)	144, 204
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	140, 185, 245
BspMI	ACCTGC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	183, 243
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	82, 142, 202, 279
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	272, 309
BstDSI	CCRYGG	2 cut(s)	142, 202
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	2 cut(s)	144, 204
BstMAI	GTCTC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	82, 186
BstUI	CGCG	2 cut(s)	144, 204
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	198, 234
BtgI	CCRYGG	2 cut(s)	142, 202
BtsCI	GGATG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	196
Cfr42I	CCGCGG	2 cut(s)	145, 205
Csp6I	GTAC	3 cut(s)	184, 244, 340
CviAII	CATG	2 cut(s)	176, 236
CviJI	RGCY	7 cut(s)	105, 113, 141, 198, 234, 271, 354
CviKI_1	RGCY	7 cut(s)	105, 113, 141, 198, 234, 271, 354
CviQI	GTAC	3 cut(s)	184, 244, 340
DdeI	CTNAG	2 cut(s)	272, 309
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	179, 239
FaiI	YATR	2 cut(s)	177, 237
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	175, 235
Fnu4HI	GCNGC	5 cut(s)	142, 205, 208, 306, 355
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	5 cut(s)	142, 205, 208, 306, 355
FspBI	CTAG	2 cut(s)	47, 216
GluI	GCNGC	5 cut(s)	142, 205, 208, 306, 355
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	198, 234
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	2 cut(s)	179, 239
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	116, 176, 291
HpyAV	CCTTC	6 cut(s)	49, 125, 173, 214, 233, 308
HpyCH4III	ACNGT	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	272, 309
Hsp92II	CATG	2 cut(s)	179, 239
KpnI	GGTACC	2 cut(s)	187, 247
KspI	CCGCGG	2 cut(s)	145, 205
LmnI	GCTCC	3 cut(s)	138, 163, 223
LpnPI	CCDG	7 cut(s)	50, 69, 78, 96, 152, 200, 276
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	14, 327
MaeI	CTAG	2 cut(s)	47, 216
MaeIII	GTNAC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	123, 273
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	8 cut(s)	64, 103, 116, 140, 153, 260, 287, 304
MspA1I	CMGCKG	2 cut(s)	144, 204
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	84, 188
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	2 cut(s)	144, 204
MwoI	GCNNNNNNNGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	188
NlaIII	CATG	2 cut(s)	179, 239
NlaIV	GGNNCC	3 cut(s)	140, 185, 245
NmuCI	GTSAC	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	157
PkrI	GCNGC	5 cut(s)	143, 206, 209, 307, 356
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	140, 185, 245
PspPI	GGNCC	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	107
RsaI	GTAC	3 cut(s)	185, 245, 341
RsaNI	GTAC	3 cut(s)	184, 244, 340
SacII	CCGCGG	2 cut(s)	145, 205
SatI	GCNGC	5 cut(s)	142, 205, 208, 306, 355
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	84, 188
SduI	GDGCHC	2 cut(s)	123, 273
SetI	ASST	3 cut(s)	75, 126, 171
SfaNI	GCATC	2 cut(s)	14, 327
Sfr274I	CTCGAG	1 cut(s)	107
Sfr303I	CCGCGG	2 cut(s)	145, 205
SgrBI	CCGCGG	2 cut(s)	145, 205
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	107, 114
SmoI	CTYRAG	2 cut(s)	107, 114
SsiI	CCGC	7 cut(s)	136, 142, 144, 202, 204, 207, 355
SspMI	CTAG	2 cut(s)	47, 216
StyD4I	CCNGG	2 cut(s)	82, 186
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	108
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	4 cut(s)	144, 207, 210, 357
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	192, 252
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	2 cut(s)	47, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.