Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

11447148 .. 11447714

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1062000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGTCGGAACAGGAAAAACAAGACCCCCAGAAGAGAAATGAGCTGGACGAGAAGGCAAGGCGGGGAGAGACCATCGTGCCCGGTGGTACTGGTGGCCATAGCCTTGAAGCACAGGAGCACCTTGCTGAAGGGCGGAGCCGTGGAGGGCAGACGAGGAAGGGACAGATAGGGGAAGAGGGGTACCATGAGATGGGAAAGAAGGGCGGGCTGAGCACCACTGACAAGCCCGGAGGAGAGCGTGCTGCTGAGGAAGGCATCAAGATTGACGAGTCGAAGTTCAAGACCAAGAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

100

Amino Acids

10.79

Weight (kDa)

6.85

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 70	5.1e-28	Small hydrophilic plant seed protein
LEA_5	PF00477	49 - 94	3.2e-19	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	193
AciI	CCGC	3 cut(s)	64, 136, 207
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	91, 185
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	110, 283
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	2 cut(s)	123, 218
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	84, 231
BaeGI	GKGCMC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	123, 218
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	83, 187
BceAI	ACGGC	1 cut(s)	126
BcnI	CCSGG	2 cut(s)	84, 231
BcoDI	GTCTC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	246
BlpI	GCTNAGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	84, 231
BmiI	GGNNCC	2 cut(s)	140, 185
BmrFI	CCNGG	2 cut(s)	84, 231
BmsI	GCATC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	84, 231
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	203, 240
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	123, 218
BsiSI	CCGG	2 cut(s)	84, 231
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	84, 123, 218
Bsp1720I	GCTNAGC	1 cut(s)	212
BspACI	CCGC	3 cut(s)	64, 136, 207
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	204, 241
BspLI	GGNNCC	2 cut(s)	140, 185
BspT107I	GGYRCC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	2 cut(s)	29, 171
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	209, 243
BstDEI	CTNAG	2 cut(s)	212, 249
BstDSI	CCRYGG	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	82, 229
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	209, 243
Csp6I	GTAC	2 cut(s)	90, 184
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	6 cut(s)	46, 99, 105, 141, 211, 229
CviKI_1	RGCY	6 cut(s)	46, 99, 105, 141, 211, 229
CviQI	GTAC	2 cut(s)	90, 184
DdeI	CTNAG	2 cut(s)	212, 249
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	29, 171
EarI	CTCTTC	2 cut(s)	29, 171
EciI	GGCGGA	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	150
FaeI	CATG	1 cut(s)	191
FaiI	YATR	2 cut(s)	102, 189
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	187
FauI	CCCGC	2 cut(s)	57, 200
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	84, 231
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	2 cut(s)	272, 292
HpaII	CCGG	2 cut(s)	84, 231
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	262, 283
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	49, 125, 154, 196, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	212, 249
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	191
KpnI	GGTACC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	118, 138
LpnPI	CCDG	6 cut(s)	32, 44, 78, 97, 101, 244
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	267
MboII	GAAGA	2 cut(s)	46, 188
MhlI	GDGCHC	3 cut(s)	84, 123, 218
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	140, 150, 172, 227, 244
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	84, 231
MspR9I	CCNGG	2 cut(s)	84, 231
MwoI	GCNNNNNNNGC	1 cut(s)	213
NciI	CCSGG	2 cut(s)	84, 231
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	140, 185
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	140, 185
RsaI	GTAC	2 cut(s)	91, 185
RsaNI	GTAC	2 cut(s)	90, 184
SatI	GCNGC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	84, 231
SduI	GDGCHC	3 cut(s)	84, 123, 218
SetI	ASST	2 cut(s)	48, 126
SfaNI	GCATC	1 cut(s)	267
SsiI	CCGC	3 cut(s)	64, 136, 207
StyD4I	CCNGG	2 cut(s)	82, 229
TaqI	TCGA	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	292
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	245
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.