Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

18695512 .. 18696080

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCATCCGAACAGGAAAGGCGAGACCCACAGAAAAGGCAAGAACTGGACCAAAAGGCAAGGCAGGGAGAGACCGTAGTCCCAGGTGGAACCGGCGGCAAGAGCCTCGATGCTCAGGCGCACCTTGCTGAAGGACGCCACCGCGGAGGTGAGACAAGGAAGGAGCAGCTAGGTCATGATGGGTACCAGGAACTGGGCCAGCGCGGAGGTGAGACAAGGAAGGAGCAGCTAGGTCATGAGGGGTACCAGGAACTGGGGCAGCGCGGTGGCGAGGCCAGGAAGGAGCAGCTTGGTCATGAAGGGTACCAGGAGCTGGGGCACGGCGGAGGCGAGGCCAGGAAGGAGCAGATTGGACATGAAGGGTACCAGGAGATGGGCAAAAAAGGCGGGCTCAGCACTAAGGACAAGTCCGGAGGAGAGCGTGCTGCCGAGGAAGGCATCGAGATTGACGAGTCCAAGTACAAGACGAAGAGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

160

Amino Acids

17.46

Weight (kDa)

6.19

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 90	3.4e-36	Small hydrophilic plant seed protein
LEA_5	PF00477	88 - 154	3.8e-30	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	4 cut(s)	183, 243, 303, 363
AccB1I	GGYRCC	4 cut(s)	183, 243, 303, 363
AccB7I	CCANNNNNTGG	4 cut(s)	193, 253, 313, 373
AccII	CGCG	3 cut(s)	144, 204, 264
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	8 cut(s)	96, 142, 144, 204, 264, 324, 387, 475
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	5 cut(s)	185, 245, 305, 365, 461
AfiI	CCNNNNNNNGG	4 cut(s)	193, 253, 313, 373
AjnI	CCWGG	7 cut(s)	82, 186, 246, 275, 306, 335, 366
AluBI	AGCT	4 cut(s)	169, 229, 289, 313
AluI	AGCT	4 cut(s)	169, 229, 289, 313
Alw26I	GTCTC	4 cut(s)	18, 65, 146, 206
AlwNI	CAGNNNCTG	3 cut(s)	193, 253, 313
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	3 cut(s)	196, 273, 333
ApeKI	GCWGC	5 cut(s)	166, 226, 259, 286, 425
Asp718I	GGTACC	4 cut(s)	183, 243, 303, 363
AspLEI	GCGC	3 cut(s)	121, 204, 264
AspS9I	GGNCC	2 cut(s)	49, 196
AsuHPI	GGTGA	2 cut(s)	161, 221
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	4 cut(s)	183, 243, 303, 363
BanII	GRGCYC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	178, 238, 271, 298, 412
BccI	CCATC	2 cut(s)	173, 367
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
BcoDI	GTCTC	4 cut(s)	18, 65, 146, 206
BfaI	CTAG	2 cut(s)	170, 230
BisI	GCNGC	7 cut(s)	97, 167, 227, 260, 287, 426, 475
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	7 cut(s)	98, 168, 228, 261, 288, 427, 476
Bme1390I	CCNGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 196
BmiI	GGNNCC	5 cut(s)	91, 185, 245, 305, 365
BmrFI	CCNGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
BmrI	ACTGGG	2 cut(s)	203, 263
BmsI	GCATC	3 cut(s)	14, 100, 447
BmuI	ACTGGG	2 cut(s)	203, 263
BoxI	GACNNNNGTC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	136
BsaI	GGTCTC	2 cut(s)	18, 65
BsaJI	CCNNGG	3 cut(s)	82, 142, 429
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 253, 313, 373
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	51, 198, 258
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
BseDI	CCNNGG	3 cut(s)	82, 142, 429
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	4 cut(s)	193, 253, 313, 373
BseMII	CTCAG	2 cut(s)	128, 406
BseNI	ACTGG	3 cut(s)	51, 198, 258
BseRI	GAGGAG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	5 cut(s)	178, 238, 271, 298, 412
BseYI	CCCAGC	1 cut(s)	313
Bsh1236I	CGCG	3 cut(s)	144, 204, 264
BshFI	GGCC	3 cut(s)	198, 275, 335
BshNI	GGYRCC	4 cut(s)	183, 243, 303, 363
BsiSI	CCGG	2 cut(s)	93, 411
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	193, 253, 313, 373
BsmAI	GTCTC	4 cut(s)	18, 65, 146, 206
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	3 cut(s)	198, 275, 335
Bso31I	GGTCTC	2 cut(s)	18, 65
Bsp1286I	GDGCHC	2 cut(s)	321, 393
Bsp13I	TCCGGA	1 cut(s)	410
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	8 cut(s)	96, 142, 144, 204, 264, 324, 387, 475
BspANI	GGCC	3 cut(s)	198, 275, 335
BspCNI	CTCAG	2 cut(s)	127, 405
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	3 cut(s)	144, 204, 264
BspHI	TCATGA	3 cut(s)	175, 235, 295
BspLI	GGNNCC	5 cut(s)	91, 185, 245, 305, 365
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	4 cut(s)	183, 243, 303, 363
BspTNI	GGTCTC	2 cut(s)	18, 65
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	51, 198, 258
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	82, 142, 429
BssNI	GRCGYC	1 cut(s)	136
Bst2UI	CCWGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	200, 389, 423
BstDEI	CTNAG	3 cut(s)	114, 392, 399
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	3 cut(s)	144, 204, 264
BstHHI	GCGC	3 cut(s)	121, 204, 264
BstMAI	GTCTC	4 cut(s)	18, 65, 146, 206
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 125, 384, 393
BstNI	CCWGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSCI	CCNGG	7 cut(s)	82, 186, 246, 275, 306, 335, 366
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	3 cut(s)	144, 204, 264
BstV1I	GCAGC	5 cut(s)	178, 238, 271, 298, 412
BsuRI	GGCC	3 cut(s)	198, 275, 335
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	5
Cac8I	GCNNGC	3 cut(s)	200, 389, 423
CaiI	CAGNNNCTG	3 cut(s)	193, 253, 313
CciI	TCATGA	3 cut(s)	175, 235, 295
CfoI	GCGC	3 cut(s)	121, 204, 264
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	49, 196
Cfr42I	CCGCGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	5 cut(s)	184, 244, 304, 364, 460
CviAII	CATG	4 cut(s)	176, 236, 296, 356
CviQI	GTAC	5 cut(s)	184, 244, 304, 364, 460
DdeI	CTNAG	3 cut(s)	114, 392, 399
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	2 cut(s)	18, 65
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	7 cut(s)	82, 186, 246, 275, 306, 335, 366
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	4 cut(s)	179, 239, 299, 359
FaiI	YATR	4 cut(s)	177, 237, 297, 357
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	175, 235, 295, 355
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	7 cut(s)	97, 167, 227, 260, 287, 426, 475
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	7 cut(s)	97, 167, 227, 260, 287, 426, 475
FspBI	CTAG	2 cut(s)	170, 230
GlaI	GCGC	3 cut(s)	120, 203, 263
GluI	GCNGC	7 cut(s)	97, 167, 227, 260, 287, 426, 475
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	198, 275, 335
HapII	CCGG	2 cut(s)	93, 411
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	3 cut(s)	121, 204, 264
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	179, 239, 299, 359
Hin6I	GCGC	3 cut(s)	119, 202, 262
HinP1I	GCGC	3 cut(s)	119, 202, 262
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	2 cut(s)	93, 411
HphI	GGTGA	2 cut(s)	161, 221
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	176, 236, 296, 411, 442
HpyAV	CCTTC	8 cut(s)	125, 154, 214, 274, 293, 334, 353, 428
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 125, 384, 393
HpyF3I	CTNAG	3 cut(s)	114, 392, 399
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	179, 239, 299, 359
HspAI	GCGC	3 cut(s)	119, 202, 262
Kpn2I	TCCGGA	1 cut(s)	410
KpnI	GGTACC	4 cut(s)	187, 247, 307, 367
KspI	CCGCGG	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	5 cut(s)	163, 223, 283, 310, 343
Lsp1109I	GCAGC	5 cut(s)	178, 238, 271, 298, 412
LweI	GCATC	3 cut(s)	14, 100, 447
MaeI	CTAG	2 cut(s)	170, 230
MhlI	GDGCHC	2 cut(s)	321, 393
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	9 cut(s)	116, 140, 200, 232, 265, 320, 325, 407, 424
MroI	TCCGGA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	93, 411
MspR9I	CCNGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
MvaI	CCWGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
MvnI	CGCG	3 cut(s)	144, 204, 264
MwoI	GCNNNNNNNGC	4 cut(s)	102, 125, 384, 393
NlaIII	CATG	4 cut(s)	179, 239, 299, 359
NlaIV	GGNNCC	5 cut(s)	91, 185, 245, 305, 365
NmeAIII	GCCGAG	1 cut(s)	454
PagI	TCATGA	3 cut(s)	175, 235, 295
PciSI	GCTCTTC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 447
PflMI	CCANNNNNTGG	4 cut(s)	193, 253, 313, 373
PkrI	GCNGC	7 cut(s)	98, 168, 228, 261, 288, 427, 476
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PshAI	GACNNNNGTC	1 cut(s)	77
Psp6I	CCWGG	7 cut(s)	82, 186, 246, 275, 306, 335, 366
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	7 cut(s)	82, 186, 246, 275, 306, 335, 366
PspN4I	GGNNCC	5 cut(s)	91, 185, 245, 305, 365
PspPI	GGNCC	2 cut(s)	49, 196
PstNI	CAGNNNCTG	3 cut(s)	193, 253, 313
RsaI	GTAC	5 cut(s)	185, 245, 305, 365, 461
RsaNI	GTAC	5 cut(s)	184, 244, 304, 364, 460
SacII	CCGCGG	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	464
SatI	GCNGC	7 cut(s)	97, 167, 227, 260, 287, 426, 475
Sau96I	GGNCC	2 cut(s)	49, 196
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	7 cut(s)	84, 188, 248, 277, 308, 337, 368
SduI	GDGCHC	2 cut(s)	321, 393
SfaNI	GCATC	3 cut(s)	14, 100, 447
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	49
SsiI	CCGC	8 cut(s)	96, 142, 144, 204, 264, 324, 387, 475
SspMI	CTAG	2 cut(s)	170, 230
StyD4I	CCNGG	7 cut(s)	82, 186, 246, 275, 306, 335, 366
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	108, 441
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	99, 477
TseI	GCWGC	5 cut(s)	166, 226, 259, 286, 425
TspDTI	ATGAA	2 cut(s)	312, 372
Van91I	CCANNNNNTGG	4 cut(s)	193, 253, 313, 373
VpaK11BI	GGWCC	1 cut(s)	49
XspI	CTAG	2 cut(s)	170, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.