Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

39103661 .. 39104231

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCATCGGAGCAGGAAAGAAGGGATCCACAGAAGAGACAAGAGCTGGACGCGAAAGCCAAGCAGGGAGAGACTGTTGTTCCAGGTGGAACTGGTGGCAAGACCGCAAGAGCCTTGAAGCTCAAGAACACCTGGCTGAAGCGTGGAGGCGAGACCAGGAAGGAGCAGCTGGGACATGAAGGGTACCAGGAGATTGGTCACCGCGGAGGCGAGACCAGGAGGGAGCAGATAGGTCATGAAGGGTATCATGAGATGGGGAAGAAAGGAGGATTGAGCACCAAGGACAAGTCTGGAGGAGAGCGTGCTGCTGAGGAAGGGATCCCAATTGACGAGTCCAAGTACAAAACTAGGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

9.48

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 114	1.6e-44	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AccII	CGCG	2 cut(s)	53, 204
AciI	CCGC	3 cut(s)	105, 202, 204
AclWI	GGATC	4 cut(s)	20, 33, 313, 326
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	2 cut(s)	185, 341
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	5 cut(s)	82, 131, 155, 186, 215
AluBI	AGCT	3 cut(s)	46, 121, 169
AluI	AGCT	3 cut(s)	46, 121, 169
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	4 cut(s)	31, 65, 146, 206
AlwI	GGATC	4 cut(s)	20, 33, 313, 326
ApeKI	GCWGC	2 cut(s)	166, 305
Asp718I	GGTACC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	191
BamHI	GGATCC	2 cut(s)	25, 318
BanI	GGYRCC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	178, 292
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	5 cut(s)	84, 133, 157, 188, 217
BcoDI	GTCTC	4 cut(s)	31, 65, 146, 206
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	2 cut(s)	167, 306
BlsI	GCNGC	2 cut(s)	168, 307
Bme1390I	CCNGG	5 cut(s)	84, 133, 157, 188, 217
BmiI	GGNNCC	3 cut(s)	27, 185, 320
BmrFI	CCNGG	5 cut(s)	84, 133, 157, 188, 217
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	107
BsaI	GGTCTC	2 cut(s)	146, 206
BsaJI	CCNNGG	2 cut(s)	202, 279
BsaXI	ACNNNNNCTCC	3 cut(s)	60, 90, 337
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	5 cut(s)	84, 133, 157, 188, 217
BseDI	CCNNGG	2 cut(s)	202, 279
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	178, 292
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	53, 204
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	4 cut(s)	31, 65, 146, 206
BsmFI	GGGAC	1 cut(s)	186
Bso31I	GGTCTC	2 cut(s)	146, 206
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	25, 318
BspACI	CCGC	3 cut(s)	105, 202, 204
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	53, 204
BspHI	TCATGA	2 cut(s)	235, 247
BspLI	GGNNCC	3 cut(s)	27, 185, 320
BspPI	GGATC	4 cut(s)	20, 33, 313, 326
BspT107I	GGYRCC	1 cut(s)	183
BspTNI	GGTCTC	2 cut(s)	146, 206
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	202, 279
BssMI	GATC	2 cut(s)	25, 318
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	5 cut(s)	84, 133, 157, 188, 217
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	202
BstEII	GGTNACC	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	53, 204
BstKTI	GATC	2 cut(s)	28, 321
BstMAI	GTCTC	4 cut(s)	31, 65, 146, 206
BstMBI	GATC	2 cut(s)	25, 318
BstNI	CCWGG	5 cut(s)	84, 133, 157, 188, 217
BstPI	GGTNACC	1 cut(s)	197
BstSCI	CCNGG	5 cut(s)	82, 131, 155, 186, 215
BstUI	CGCG	2 cut(s)	53, 204
BstV1I	GCAGC	2 cut(s)	178, 292
BstX2I	RGATCY	2 cut(s)	25, 318
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	2 cut(s)	25, 318
BtgI	CCRYGG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	2 cut(s)	235, 247
Cfr42I	CCGCGG	1 cut(s)	205
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	184, 340
CviAII	CATG	3 cut(s)	176, 236, 248
CviJI	RGCY	6 cut(s)	46, 59, 113, 121, 136, 169
CviKI_1	RGCY	6 cut(s)	46, 59, 113, 121, 136, 169
CviQI	GTAC	2 cut(s)	184, 340
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	27, 320
DpnII	GATC	2 cut(s)	25, 318
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	2 cut(s)	146, 206
Eco57I	CTGAAG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	197
EcoRII	CCWGG	5 cut(s)	82, 131, 155, 186, 215
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	3 cut(s)	179, 239, 251
FaiI	YATR	3 cut(s)	177, 237, 249
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	3 cut(s)	175, 235, 247
Fnu4HI	GCNGC	2 cut(s)	167, 306
Fsp4HI	GCNGC	2 cut(s)	167, 306
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	167, 306
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	179, 239, 251
HinfI	GANTC	2 cut(s)	332, 352
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	124, 236, 248, 291
HpyAV	CCTTC	5 cut(s)	15, 154, 173, 233, 308
HpyCH4III	ACNGT	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	179, 239, 251
KpnI	GGTACC	1 cut(s)	187
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	25, 318
LmnI	GCTCC	3 cut(s)	10, 163, 223
Lsp1109I	GCAGC	2 cut(s)	178, 292
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	27, 320
MboI	GATC	2 cut(s)	25, 318
MboII	GAAGA	2 cut(s)	46, 271
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	25, 318
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	341, 346
MnlI	CCTC	6 cut(s)	140, 200, 213, 260, 287, 304
MspA1I	CMGCKG	2 cut(s)	169, 204
MspR9I	CCNGG	5 cut(s)	84, 133, 157, 188, 217
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	5 cut(s)	84, 133, 157, 188, 217
MvnI	CGCG	2 cut(s)	53, 204
NdeII	GATC	2 cut(s)	25, 318
NlaIII	CATG	3 cut(s)	179, 239, 251
NlaIV	GGNNCC	3 cut(s)	27, 185, 320
NmuCI	GTSAC	1 cut(s)	197
PagI	TCATGA	2 cut(s)	235, 247
PkrI	GCNGC	2 cut(s)	168, 307
PleI	GAGTC	2 cut(s)	340, 346
PpsI	GAGTC	2 cut(s)	340, 346
Psp6I	CCWGG	5 cut(s)	82, 131, 155, 186, 215
PspEI	GGTNACC	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	5 cut(s)	82, 131, 155, 186, 215
PspN4I	GGNNCC	3 cut(s)	27, 185, 320
PsuI	RGATCY	2 cut(s)	25, 318
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	185, 341
RsaNI	GTAC	2 cut(s)	184, 340
SacII	CCGCGG	1 cut(s)	205
SatI	GCNGC	2 cut(s)	167, 306
Sau3AI	GATC	2 cut(s)	25, 318
SchI	GAGTC	2 cut(s)	341, 346
ScrFI	CCNGG	5 cut(s)	84, 133, 157, 188, 217
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	48, 88, 123, 134, 171, 235
SfaNI	GCATC	1 cut(s)	14
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	3 cut(s)	105, 202, 204
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	5 cut(s)	82, 131, 155, 186, 215
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	1 cut(s)	324
TatI	WGTACW	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	166, 305
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	192, 252
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.