Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

26620388 .. 26621252

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTTCGCAACAGGAAAGGGCTGAGCTTGACGCCAGGGCTAGGCAGGGCCAGACAGTGGTCCCTGGAGGAACTGGTGGCAAAACTCTTGAAGCCCAGGAACACTTTGCTGAAGGGAGGAGCAAAGGCGGGCAGACAAGGAAGGAGCAGATAGGGCATGAAGGGTACCAGGAGATGGGTCGCAAGGGCGGGCTTAGCACATCCGACGAGCTAGGAGGAGAACTTGCGGCTCGGGAGCGAATTCCCATTGCTGAGTCTAAATACAAAACCAGATCAAGCTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0031647 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050821 GO:0050896 GO:0061458 GO:0065007 GO:0065008 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

96

Amino Acids

10.25

Weight (kDa)

8.08

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	2 cut(s)	58, 175
AciI	CCGC	3 cut(s)	129, 189, 227
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	42, 58, 175
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	4 cut(s)	35, 64, 96, 168
AluBI	AGCT	3 cut(s)	28, 211, 279
AluI	AGCT	3 cut(s)	28, 211, 279
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	49, 61
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	165
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	4 cut(s)	37, 66, 98, 170
BfaI	CTAG	2 cut(s)	42, 212
BisI	GCNGC	1 cut(s)	228
BlpI	GCTNAGC	2 cut(s)	24, 194
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	4 cut(s)	37, 66, 98, 170
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	49, 61
BmiI	GGNNCC	2 cut(s)	63, 167
BmrFI	CCNGG	4 cut(s)	37, 66, 98, 170
BoxI	GACNNNNGTC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	2 cut(s)	24, 194
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	36, 64, 96
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 58, 175
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	4 cut(s)	37, 66, 98, 170
BseDI	CCNNGG	3 cut(s)	36, 64, 96
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	42, 58, 175
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	15, 243
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	133, 231
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	42, 58, 175
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	272
Bsp1720I	GCTNAGC	2 cut(s)	24, 194
BspACI	CCGC	3 cut(s)	129, 189, 227
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	16, 244
BspLI	GGNNCC	2 cut(s)	63, 167
BspT107I	GGYRCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	36, 64, 96
BssMI	GATC	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	4 cut(s)	37, 66, 98, 170
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	131, 191
BstDEI	CTNAG	3 cut(s)	24, 194, 252
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 195
BstNI	CCWGG	4 cut(s)	37, 66, 98, 170
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSCI	CCNGG	4 cut(s)	35, 64, 96, 168
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	131, 191
Cfr13I	GGNCC	2 cut(s)	49, 61
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	158, 285
CviJI	RGCY	9 cut(s)	23, 28, 41, 51, 95, 193, 211, 230, 279
CviKI_1	RGCY	9 cut(s)	23, 28, 41, 51, 95, 193, 211, 230, 279
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	24, 194, 252
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	4 cut(s)	35, 64, 96, 168
FaeI	CATG	2 cut(s)	161, 288
FaiI	YATR	2 cut(s)	159, 286
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	157, 284
FauI	CCCGC	2 cut(s)	122, 182
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	42, 212
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	51
HgaI	GACGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	161, 288
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	89, 233
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	107, 136, 155
HpyCH4III	ACNGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 195
HpyF3I	CTNAG	3 cut(s)	24, 194, 252
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	161, 288
KpnI	GGTACC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	3 cut(s)	120, 145, 235
MaeI	CTAG	2 cut(s)	42, 212
MalI	GATC	1 cut(s)	274
MboI	GATC	1 cut(s)	272
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	3 cut(s)	62, 111, 209
MspR9I	CCNGG	4 cut(s)	37, 66, 98, 170
MvaI	CCWGG	4 cut(s)	37, 66, 98, 170
MwoI	GCNNNNNNNGC	2 cut(s)	154, 195
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	161, 288
NlaIV	GGNNCC	2 cut(s)	63, 167
PflMI	CCANNNNNTGG	2 cut(s)	58, 175
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	59
Psp6I	CCWGG	4 cut(s)	35, 64, 96, 168
PspGI	CCWGG	4 cut(s)	35, 64, 96, 168
PspN4I	GGNNCC	2 cut(s)	63, 167
PspPI	GGNCC	2 cut(s)	49, 61
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	2 cut(s)	49, 61
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	4 cut(s)	37, 66, 98, 170
SetI	ASST	3 cut(s)	30, 213, 281
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	3 cut(s)	129, 189, 227
SspMI	CTAG	2 cut(s)	42, 212
StyD4I	CCNGG	4 cut(s)	35, 64, 96, 168
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	240
TauI	GCSGC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	2 cut(s)	58, 175
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	240
XspI	CTAG	2 cut(s)	42, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.