Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

9882055 .. 9882438

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG119700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGACCTCAGAGCAAGAGAGAAGGAATCCCCAGAAAAGGGCAGAGCTGGACGCCACCGCAAGGCAAGGAGAGACTGTTGTTCCAGGAGGAACTGGTGGCAAAAGTCTTGAGGCTCAGGAGCATCTTGCTGAAGAACGAGATAGACCGTCACAATCCCTCAAACCGATCACCAAACCCCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

61

Amino Acids

6.71

Weight (kDa)

6.57

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 52	8.7e-17	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	36, 37, 60
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 37, 60
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	36, 37, 60
BseMII	CTCAG	2 cut(s)	21, 128
BseNI	ACTGG	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	36, 37, 60
BsmAI	GTCTC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	20, 127
BsrI	ACTGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	76, 147
BstACI	GRCGYC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	7, 114
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
CseI	GACGC	1 cut(s)	59
CviJI	RGCY	2 cut(s)	46, 113
CviKI_1	RGCY	2 cut(s)	46, 113
DdeI	CTNAG	2 cut(s)	7, 114
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	107, 116
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	76, 147
HpyF3I	CTNAG	2 cut(s)	7, 114
Hsp92I	GRCGYC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	32, 44, 69, 78, 96, 101
LweI	GCATC	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	143
MnlI	CCTC	4 cut(s)	16, 80, 103, 167
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	2 cut(s)	8, 48
SfaNI	GCATC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	76, 147
TfiI	GAWTC	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.