Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

6660440 .. 6660783

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCACAATCGACGCAGGACATGAAGGACCCCCAGAAAAGGGACGAGCTGGATGAGAGGGCAAGGAAGGGAGAGACTGTCATTCCTGGTGGAACTCGCGGGAAGAGTCTCGAGGCCCAAGAGCACCTTGCTGAAGGACGACGCAAGGGTGGACTGAGCACCACGGACCAGTCCGGAGAAGAGCGTGCTCGCGAGGAAGGCATTCCTTTAAATCCTCTCGAGGCCAAGGAAAAGCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0031647 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050821 GO:0050896 GO:0061458 GO:0065007 GO:0065008 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

81

Amino Acids

8.82

Weight (kDa)

5.46

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	11 - 51	4.2e-16	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	99, 192
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	39, 40
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	3 cut(s)	126, 161, 190
Alw26I	GTCTC	2 cut(s)	68, 113
Ama87I	CYCGRG	2 cut(s)	110, 218
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	2 cut(s)	114, 222
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	3 cut(s)	28, 115, 166
AvaI	CYCGRG	2 cut(s)	110, 218
AvaII	GGWCC	2 cut(s)	28, 166
Bbv12I	GWGCWC	3 cut(s)	126, 161, 190
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	68, 113
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	28, 166
BmeT110I	CYCGRG	2 cut(s)	110, 218
BmgT120I	GGNCC	3 cut(s)	28, 115, 166
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	162, 225
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 40
Bse1I	ACTGG	1 cut(s)	169
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	162, 225
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	39, 40
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	99, 192
BshFI	GGCC	2 cut(s)	116, 224
BsiHKAI	GWGCWC	3 cut(s)	126, 161, 190
BsiHKCI	CYCGRG	2 cut(s)	110, 218
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	39, 40
BsmAI	GTCTC	2 cut(s)	68, 113
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	116, 224
BsoBI	CYCGRG	2 cut(s)	110, 218
Bsp1286I	GDGCHC	3 cut(s)	126, 161, 190
Bsp13I	TCCGGA	1 cut(s)	173
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	116, 224
BspCNI	CTCAG	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	2 cut(s)	99, 192
BspLI	GGNNCC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	162, 225
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	98, 174
BstC8I	GCNNGC	2 cut(s)	186, 190
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	99, 192
BstMAI	GTCTC	2 cut(s)	68, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	2 cut(s)	99, 192
BsuRI	GGCC	2 cut(s)	116, 224
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	58
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	186, 190
Cfr13I	GGNCC	3 cut(s)	28, 115, 166
CseI	GACGC	2 cut(s)	22, 150
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	49, 116, 224, 240
CviKI_1	RGCY	4 cut(s)	49, 116, 224, 240
DdeI	CTNAG	1 cut(s)	155
DraI	TTTAAA	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	98, 174
EarI	CTCTTC	2 cut(s)	98, 174
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	28, 166
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	110, 218
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	25
FaiI	YATR	1 cut(s)	23
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	116, 224
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	22, 150
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188III	TCNNGA	4 cut(s)	110, 174, 191, 218
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	2 cut(s)	16, 144
HpyAV	CCTTC	4 cut(s)	19, 61, 128, 191
HpyCH4III	ACNGT	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	173
LguI	GCTCTTC	1 cut(s)	174
LpnPI	CCDG	7 cut(s)	2, 35, 47, 72, 99, 182, 187
MboII	GAAGA	2 cut(s)	115, 191
MhlI	GDGCHC	3 cut(s)	126, 161, 190
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	51, 106, 187, 214, 225
MroI	TCCGGA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	209
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	99, 192
MwoI	GCNNNNNNNGC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	30
NruI	TCGCGA	1 cut(s)	192
PaeR7I	CTCGAG	2 cut(s)	110, 218
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	3 cut(s)	28, 115, 166
PspPPI	RGGWCCY	1 cut(s)	28
RruI	TCGCGA	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	209
Sau96I	GGNCC	3 cut(s)	28, 115, 166
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	3 cut(s)	126, 161, 190
SetI	ASST	2 cut(s)	51, 129
Sfr274I	CTCGAG	2 cut(s)	110, 218
SinI	GGWCC	2 cut(s)	28, 166
SlaI	CTCGAG	2 cut(s)	110, 218
SmlI	CTYRAG	2 cut(s)	110, 218
SmoI	CTYRAG	2 cut(s)	110, 218
SsiI	CCGC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	11, 111, 219
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	28, 166
XhoI	CTCGAG	2 cut(s)	110, 218
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.