Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8007370.1

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8007370.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 173 bp

atgctgtgtgcacttgaaaatgaactagggcgacacaagggaggcgagacgaggagggagcagataggtcatgaagggtatcatgagatgggcaaaaagggtggtctgagcaccatagagaagtccggtggagagcgtgctgcggaggaaggcattccgattgacgagtccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0031647 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050821 GO:0050896 GO:0061458 GO:0065007 GO:0065008 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

57

Amino Acids

6.18

Weight (kDa)

5.27

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	17
Alw21I	GWGCWC	2 cut(s)	13, 113
Alw26I	GTCTC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	13, 113
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	13, 113
BsiSI	CCGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	13, 113
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	99
BspHI	TCATGA	2 cut(s)	70, 82
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	2 cut(s)	70, 82
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	2 cut(s)	71, 83
DdeI	CTNAG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	2 cut(s)	74, 86
FaiI	YATR	3 cut(s)	72, 84, 116
FatI	CATG	2 cut(s)	70, 82
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	141
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	74, 86
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	108, 159
Hpy188III	TCNNGA	2 cut(s)	71, 83
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	68, 143
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	74, 86
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	13, 113
MnlI	CCTC	4 cut(s)	35, 45, 48, 139
MroXI	GAANNNNTTC	1 cut(s)	153
MspI	CCGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	74, 86
PagI	TCATGA	2 cut(s)	70, 82
PctI	GAATGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	13, 113
SetI	ASST	1 cut(s)	70
SgeI	CNNG	9 cut(s)	26, 38, 49, 58, 63, 83, 95, 138, 149
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	26
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	36, 87
VneI	GTGCAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.