Rroxscaffold_3G00269140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001002
Physical Location & Seq
Reverse (-)
62065128 .. 62068475
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269140.1

Sequence Viewer

Length: 414 bp
ATGTCCGTAAAAAAGGGGAGTCTTAGGGTTCGGAAAAACAGGATTTGGTCGTTTGCTTGTCCGGCGGCTCCCCCACTCCGAATGTGGCCTCTCGGTTTTGTCTGCGGGAGGCGGGTGCTGCCGGACAGGCGTGGTTGGGTGGTGGTCAACGGAGGGGCTGCGGCAAGAAATTCTCTTTCATCTTATGACGGTGGCGACAGTGGCTTCATGGCGTTGGGTGGCGGCGATGGGTTCGATCACACGCTGCTTGGTTTGTGGAGTGGTCGCCGCGCGTTGTCGTGGAAGCATGGTTTGGTCGGTTCGATTGAAGTGCACGGTCAAAGTAGGTTTGGTGGGATTGGTTTGGCTGCGTTTGACAGGTCACCAAAATCTGGGTTGATCTTTGCAGACTACATTAGTTTTGGTGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.64

Weight (kDa)

10.59

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AccII CGCG 2 cut(s) 270, 272
AciI CCGC 6 cut(s) 65, 105, 112, 161, 222, 268
AcsI RAATTY 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
Alw21I GWGCWC 1 cut(s) 315
Alw44I GTGCAC 1 cut(s) 311
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 118, 158, 244, 347
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 105, 145, 231, 334
BccI CCATC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 8 cut(s) 66, 119, 159, 162, 223, 245, 268, 348
BlsI GCNGC 8 cut(s) 67, 120, 160, 163, 224, 246, 269, 349
BmiI GGNNCC 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 4 cut(s) 105, 145, 231, 334
Bsh1236I CGCG 2 cut(s) 270, 272
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 2 cut(s) 62, 122
BslI CCNNNNNNNGG 1 cut(s) 371
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 235, 378
BspACI CCGC 6 cut(s) 65, 105, 112, 161, 222, 268
BspANI GGCC 1 cut(s) 88
BspFNI CGCG 2 cut(s) 270, 272
BspLI GGNNCC 1 cut(s) 69
BssMI GATC 2 cut(s) 235, 378
Bst4CI ACNGT 3 cut(s) 191, 200, 317
BstDEI CTNAG 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 360
BstFNI CGCG 2 cut(s) 270, 272
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 2 cut(s) 238, 381
BstMBI GATC 2 cut(s) 235, 378
BstMWI GCNNNNNNNGC 4 cut(s) 62, 118, 127, 201
BstPI GGTNACC 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 2 cut(s) 270, 272
BstV1I GCAGC 4 cut(s) 105, 145, 231, 334
BsuRI GGCC 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 272
CviAII CATG 2 cut(s) 208, 287
CviJI RGCY 5 cut(s) 68, 88, 158, 204, 347
CviKI_1 RGCY 5 cut(s) 68, 88, 158, 204, 347
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 237, 380
DpnII GATC 2 cut(s) 235, 378
Eco91I GGTNACC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 360
FaeI CATG 2 cut(s) 211, 290
FaiI YATR 3 cut(s) 186, 209, 288
FatI CATG 2 cut(s) 207, 286
FauI CCCGC 2 cut(s) 98, 105
Fnu4HI GCNGC 8 cut(s) 66, 119, 159, 162, 223, 245, 268, 348
Fsp4HI GCNGC 8 cut(s) 66, 119, 159, 162, 223, 245, 268, 348
GlaI GCGC 1 cut(s) 271
GluI GCNGC 8 cut(s) 66, 119, 159, 162, 223, 245, 268, 348
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 62, 122
HhaI GCGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 211, 290
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 62, 122
HphI GGTGA 1 cut(s) 354
Hpy166II GTNNAC 2 cut(s) 148, 313
Hpy188I TCNGA 2 cut(s) 33, 80
Hpy8I GTNNAC 2 cut(s) 148, 313
HpyCH4III ACNGT 3 cut(s) 191, 200, 317
HpyCH4V TGCA 2 cut(s) 313, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 118, 127, 201
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 2 cut(s) 211, 290
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 235, 378
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 25, 75, 112, 135, 343, 357
Lsp1109I GCAGC 4 cut(s) 105, 145, 231, 334
MaeIII GTNAC 1 cut(s) 360
MalI GATC 2 cut(s) 237, 380
MboI GATC 2 cut(s) 235, 378
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 3 cut(s) 99, 102, 146
MspI CCGG 2 cut(s) 62, 122
MvnI CGCG 2 cut(s) 270, 272
MwoI GCNNNNNNNGC 4 cut(s) 62, 118, 127, 201
NdeII GATC 2 cut(s) 235, 378
NlaIII CATG 2 cut(s) 211, 290
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 360
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 8 cut(s) 67, 120, 160, 163, 224, 246, 269, 349
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 69
SatI GCNGC 8 cut(s) 66, 119, 159, 162, 223, 245, 268, 348
Sau3AI GATC 2 cut(s) 235, 378
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 315
SetI ASST 2 cut(s) 329, 362
Sse9I AATT 1 cut(s) 169
SsiI CCGC 6 cut(s) 65, 105, 112, 161, 222, 268
TaaI ACNGT 3 cut(s) 191, 200, 317
TaqI TCGA 2 cut(s) 234, 302
TasI AATT 1 cut(s) 169
TauI GCSGC 4 cut(s) 68, 164, 225, 270
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 360
TseI GCWGC 4 cut(s) 118, 158, 244, 347
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 2 cut(s) 168, 196
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 311
XapI RAATTY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.