Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

39722089 .. 39722852

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTATAAGAAGATAAGTACAAAGCTATGGATCGGTCTGATCGAATCAGAACAGGAGAGAAGGGATCCCCAGAAGAGGGCAGAGCTGGACGAAAAAGCACGGCGGGGAGAGACTGTTGTTCCCGGTGGAACTGGTGGCAAGAGTCTCGAGGCTCAGGAGCACCTTGCTGAAGGACGACACAAGGGAGGGGAGAAGGGAGGGCAGACAAGGAAGGATCAGATAGGCCATGAAGGGTACCATGAGATGGGCAGGAAGGGTGGACTCAGCACCAAGGACAAGTCCGGAGGAGAGCGTGCTGCTGAGGAGGGTCTTCCGATTGACGAGTCCAAGTACAAAACTAAGAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

117

Amino Acids

12.85

Weight (kDa)

9.3

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	23 - 64	1.8e-17	Small hydrophilic plant seed protein
LEA_5	PF00477	63 - 111	9.2e-22	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	4 cut(s)	38, 59, 72, 222
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	3 cut(s)	19, 236, 332
AfiI	CCNNNNNNNGG	3 cut(s)	75, 76, 244
AluBI	AGCT	2 cut(s)	25, 85
AluI	AGCT	2 cut(s)	25, 85
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	104, 149
AlwI	GGATC	4 cut(s)	38, 59, 72, 222
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	104, 149
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	66, 236
BmrFI	CCNGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	302
Bpu10I	CCTNAGC	2 cut(s)	153, 300
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 76, 244
Bse1I	ACTGG	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	75, 76, 244
BseMII	CTCAG	3 cut(s)	167, 277, 291
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	300, 317
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	123, 282
BslI	CCNNNNNNNGG	3 cut(s)	75, 76, 244
BsmAI	GTCTC	2 cut(s)	104, 149
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	30, 39, 64, 214
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	3 cut(s)	166, 276, 292
BspEI	TCCGGA	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	66, 236
BspPI	GGATC	4 cut(s)	38, 59, 72, 222
BspT107I	GGYRCC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	30, 39, 64, 214
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	153, 263, 300, 339
BstKTI	GATC	4 cut(s)	33, 42, 67, 217
BstMAI	GTCTC	2 cut(s)	104, 149
BstMBI	GATC	4 cut(s)	30, 39, 64, 214
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	18, 235, 331
CviAII	CATG	2 cut(s)	227, 239
CviJI	RGCY	4 cut(s)	25, 85, 152, 225
CviKI_1	RGCY	4 cut(s)	25, 85, 152, 225
CviQI	GTAC	3 cut(s)	18, 235, 331
DdeI	CTNAG	4 cut(s)	153, 263, 300, 339
DpnI	GATC	4 cut(s)	32, 41, 66, 216
DpnII	GATC	4 cut(s)	30, 39, 64, 214
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	230, 242
FaiI	YATR	4 cut(s)	6, 28, 228, 240
FatI	CATG	2 cut(s)	226, 238
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	123, 282
Hin1II	CATG	2 cut(s)	230, 242
HinfI	GANTC	5 cut(s)	44, 142, 261, 323, 343
HpaII	CCGG	2 cut(s)	123, 282
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	39, 49, 219, 315
Hpy188III	TCNNGA	3 cut(s)	146, 155, 282
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	6 cut(s)	54, 164, 187, 205, 224, 247
HpyCH4III	ACNGT	1 cut(s)	115
HpyF3I	CTNAG	4 cut(s)	153, 263, 300, 339
Hsp92II	CATG	2 cut(s)	230, 242
Kpn2I	TCCGGA	1 cut(s)	281
KpnI	GGTACC	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	30, 39, 64, 214
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	38, 71, 83, 117, 136, 140, 235, 295
Lsp1109I	GCAGC	1 cut(s)	283
MalI	GATC	4 cut(s)	32, 41, 66, 216
MboI	GATC	4 cut(s)	30, 39, 64, 214
MboII	GAAGA	3 cut(s)	22, 85, 302
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	151, 255, 332
MnlI	CCTC	7 cut(s)	69, 142, 179, 191, 278, 295, 298
MroI	TCCGGA	1 cut(s)	281
MspI	CCGG	2 cut(s)	123, 282
MspR9I	CCNGG	1 cut(s)	123
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	30, 39, 64, 214
NlaIII	CATG	2 cut(s)	230, 242
NlaIV	GGNNCC	2 cut(s)	66, 236
PaeR7I	CTCGAG	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	3 cut(s)	150, 255, 331
PpsI	GAGTC	3 cut(s)	150, 255, 331
PspN4I	GGNNCC	2 cut(s)	66, 236
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	3 cut(s)	19, 236, 332
RsaNI	GTAC	3 cut(s)	18, 235, 331
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	4 cut(s)	30, 39, 64, 214
SchI	GAGTC	3 cut(s)	151, 255, 332
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	3 cut(s)	27, 87, 165
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	42, 147
TaqII	GACCGA	1 cut(s)	23
TatI	WGTACW	2 cut(s)	17, 330
TfiI	GAWTC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.