Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006766.1

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

45509 .. 47723

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006766.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggggatggggatcaaaatatcatccccacccagtacccgatttcagaattcgaatactggggatcctaccctaaaaatatcatccccacccactacccgatttcccccaaatttctccccattagggtcgaatacccgatgggatttggttgtttgcttgtcgcggcgctccaatccgacggtggactctggtctcgtccgcgggtggtgggtgttgccggacatgtgtggttgggtggtggtcagcggaggggctgcgcgatgggttctgatcacacagttgtttggtttgtggagggctgctgcgcggttgtcggggaagcatggtttggtcgatttgattaaagtgcacggtcaaagtaggtttggcgggattggtttggctgcgtttgacaggtcatcaaaatctgggttgatctttgcaggctacatcagtttggagaggtttggtctttggccaaggtgtgttattattggagtcgagcttaccgaagctgtgcaccctgactctattgcggctgaatccgagttgctggagctggcatcatggatgaggaaagttaatagctacagtctattttgtcgttttggtaggacctcaaggacccgtagaaaagtggcgagcttgatgagagggaaaggaaggggaaagactgttattcctagtggaattggtgggaagagcctcgaggctcaagagcacctagctgaaggaagacgcaagggtggattgagcaccacgaacaagtccggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

253

Amino Acids

27.48

Weight (kDa)

10.74

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	689
AccII	CGCG	4 cut(s)	166, 204, 262, 310
AccIII	TCCGGA	1 cut(s)	752
AciI	CCGC	7 cut(s)	166, 202, 204, 249, 310, 372, 518
AclWI	GGATC	3 cut(s)	20, 59, 72
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	49, 112
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	6 cut(s)	487, 497, 541, 570, 627, 710
AluI	AGCT	6 cut(s)	487, 497, 541, 570, 627, 710
Alw21I	GWGCWC	4 cut(s)	354, 504, 705, 740
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	2 cut(s)	350, 500
AlwI	GGATC	3 cut(s)	20, 59, 72
Ama87I	CYCGRG	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	752
AoxI	GGCC	1 cut(s)	458
ApaLI	GTGCAC	2 cut(s)	350, 500
ApeKI	GCWGC	4 cut(s)	257, 302, 305, 386
ApoI	RAATTY	2 cut(s)	49, 112
AspLEI	GCGC	3 cut(s)	171, 262, 310
AspS9I	GGNCC	2 cut(s)	597, 606
AsuII	TTCGAA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	597, 606
BaeGI	GKGCMC	2 cut(s)	354, 504
BalI	TGGCCA	1 cut(s)	460
BamHI	GGATCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	4 cut(s)	354, 504, 705, 740
BbvI	GCAGC	4 cut(s)	244, 289, 292, 373
BccI	CCATC	2 cut(s)	135, 258
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	666, 707
BfmI	CTRYAG	1 cut(s)	571
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	6 cut(s)	167, 258, 303, 306, 387, 519
BlsI	GCNGC	6 cut(s)	168, 259, 304, 307, 388, 520
Bme18I	GGWCC	2 cut(s)	597, 606
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	597, 606
BmiI	GGNNCC	2 cut(s)	66, 608
BmrI	ACTGGG	2 cut(s)	27, 69
BmsI	GCATC	1 cut(s)	554
BmuI	ACTGGG	2 cut(s)	27, 69
BoxI	GACNNNNGTC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	724
BpmI	CTGGAG	1 cut(s)	557
Bpu14I	TTCGAA	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	586, 681
BsaBI	GATNNNNATC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	202, 461
BsaWI	WCCGGW	1 cut(s)	752
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	33, 64
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	752
BseDI	CCNNGG	2 cut(s)	202, 461
BseGI	GGATG	4 cut(s)	12, 23, 83, 558
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	33, 64
BseSI	GKGCMC	2 cut(s)	354, 504
BseXI	GCAGC	4 cut(s)	244, 289, 292, 373
Bsh1236I	CGCG	4 cut(s)	166, 204, 262, 310
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	4 cut(s)	354, 504, 705, 740
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	2 cut(s)	221, 753
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	689
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1286I	GDGCHC	4 cut(s)	354, 504, 705, 740
Bsp13I	TCCGGA	1 cut(s)	752
Bsp143I	GATC	4 cut(s)	12, 64, 273, 417
BspACI	CCGC	7 cut(s)	166, 202, 204, 249, 310, 372, 518
BspANI	GGCC	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	752
BspFNI	CGCG	4 cut(s)	166, 204, 262, 310
BspLI	GGNNCC	2 cut(s)	66, 608
BspPI	GGATC	3 cut(s)	20, 59, 72
BspQI	GCTCTTC	1 cut(s)	677
BspT104I	TTCGAA	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	33, 64
BssECI	CCNNGG	2 cut(s)	202, 461
BssMI	GATC	4 cut(s)	12, 64, 273, 417
BssT1I	CCWWGG	1 cut(s)	461
Bst4CI	ACNGT	5 cut(s)	184, 282, 356, 575, 658
Bst6I	CTCTTC	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	427, 543, 625
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	4 cut(s)	12, 23, 83, 558
BstFNI	CGCG	4 cut(s)	166, 204, 262, 310
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	3 cut(s)	171, 262, 310
BstKTI	GATC	4 cut(s)	15, 67, 276, 420
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	12, 64, 273, 417
BstNSI	RCATGY	1 cut(s)	229
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	571
BstSLI	GKGCMC	2 cut(s)	354, 504
BstUI	CGCG	4 cut(s)	166, 204, 262, 310
BstV1I	GCAGC	4 cut(s)	244, 289, 292, 373
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	4 cut(s)	12, 23, 83, 558
Cac8I	GCNNGC	3 cut(s)	427, 543, 625
CfoI	GCGC	3 cut(s)	171, 262, 310
Cfr13I	GGNCC	2 cut(s)	597, 606
Cfr42I	CCGCGG	1 cut(s)	205
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	3 cut(s)	226, 326, 549
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	4 cut(s)	14, 66, 275, 419
DpnII	GATC	4 cut(s)	12, 64, 273, 417
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	597, 606
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	689
EcoO109I	RGGNCCY	2 cut(s)	597, 606
EcoRI	GAATTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	229, 329, 552
FaiI	YATR	3 cut(s)	227, 327, 550
FatI	CATG	3 cut(s)	225, 325, 548
FauI	CCCGC	2 cut(s)	197, 365
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	167, 258, 303, 306, 387, 519
FokI	GGATG	4 cut(s)	10, 19, 70, 565
Fsp4HI	GCNGC	6 cut(s)	167, 258, 303, 306, 387, 519
FspBI	CTAG	2 cut(s)	666, 707
GlaI	GCGC	3 cut(s)	170, 261, 309
GluI	GCNGC	6 cut(s)	167, 258, 303, 306, 387, 519
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	2 cut(s)	221, 753
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	3 cut(s)	171, 262, 310
Hin1II	CATG	3 cut(s)	229, 329, 552
Hin6I	GCGC	3 cut(s)	169, 260, 308
HinP1I	GCGC	3 cut(s)	169, 260, 308
HinfI	GANTC	4 cut(s)	188, 480, 509, 524
HpaII	CCGG	2 cut(s)	221, 753
Hpy166II	GTNNAC	3 cut(s)	187, 352, 502
Hpy188I	TCNGA	4 cut(s)	48, 180, 273, 529
Hpy188III	TCNNGA	2 cut(s)	698, 753
Hpy8I	GTNNAC	3 cut(s)	187, 352, 502
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	639, 707
HpyCH4III	ACNGT	5 cut(s)	184, 282, 356, 575, 658
HpyCH4V	TGCA	3 cut(s)	352, 425, 502
Hsp92II	CATG	3 cut(s)	229, 329, 552
HspAI	GCGC	3 cut(s)	169, 260, 308
Kpn2I	TCCGGA	1 cut(s)	752
Ksp22I	TGATCA	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	12, 64, 273, 417
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	2 cut(s)	176, 538
Lsp1109I	GCAGC	4 cut(s)	244, 289, 292, 373
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	2 cut(s)	666, 707
MalI	GATC	4 cut(s)	14, 66, 275, 419
MboI	GATC	4 cut(s)	12, 64, 273, 417
MboII	GAAGA	2 cut(s)	694, 729
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	4 cut(s)	354, 504, 705, 740
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	3 cut(s)	49, 112, 672
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	3 cut(s)	182, 489, 503
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	8 cut(s)	245, 291, 438, 549, 610, 629, 685, 698
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	2 cut(s)	345, 564
Msp20I	TGGCCA	1 cut(s)	460
MspA1I	CMGCKG	2 cut(s)	204, 249
MspI	CCGG	2 cut(s)	221, 753
MvnI	CGCG	4 cut(s)	166, 204, 262, 310
NdeII	GATC	4 cut(s)	12, 64, 273, 417
NlaIII	CATG	3 cut(s)	229, 329, 552
NlaIV	GGNNCC	2 cut(s)	66, 608
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	689
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	6 cut(s)	168, 259, 304, 307, 388, 520
PleI	GAGTC	3 cut(s)	182, 488, 503
PpsI	GAGTC	3 cut(s)	182, 488, 503
PpuMI	RGGWCCY	2 cut(s)	597, 606
PscI	ACATGT	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	192
Psp5II	RGGWCCY	2 cut(s)	597, 606
PspN4I	GGNNCC	2 cut(s)	66, 608
PspPI	GGNCC	2 cut(s)	597, 606
PspPPI	RGGWCCY	2 cut(s)	597, 606
PspXI	VCTCGAGB	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SacII	CCGCGG	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	345, 564
SatI	GCNGC	6 cut(s)	167, 258, 303, 306, 387, 519
Sau3AI	GATC	4 cut(s)	12, 64, 273, 417
Sau96I	GGNCC	2 cut(s)	597, 606
SchI	GAGTC	3 cut(s)	182, 489, 503
SduI	GDGCHC	4 cut(s)	354, 504, 705, 740
SfaNI	GCATC	1 cut(s)	554
SfcI	CTRYAG	1 cut(s)	571
Sfr274I	CTCGAG	1 cut(s)	689
Sfr303I	CCGCGG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	597, 606
SlaI	CTCGAG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	601, 689, 696
SmoI	CTYRAG	3 cut(s)	601, 689, 696
Sse9I	AATT	3 cut(s)	49, 112, 672
SsiI	CCGC	7 cut(s)	166, 202, 204, 249, 310, 372, 518
SspMI	CTAG	2 cut(s)	666, 707
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	5 cut(s)	184, 282, 356, 575, 658
TaqI	TCGA	5 cut(s)	53, 131, 336, 483, 690
TasI	AATT	3 cut(s)	49, 112, 672
TauI	GCSGC	2 cut(s)	169, 521
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	345, 564
Tru9I	TTAA	2 cut(s)	345, 564
TseI	GCWGC	4 cut(s)	257, 302, 305, 386
VneI	GTGCAC	2 cut(s)	350, 500
VpaK11BI	GGWCC	2 cut(s)	597, 606
XapI	RAATTY	2 cut(s)	49, 112
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	689
XspI	CTAG	2 cut(s)	666, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.