Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015198.1

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2769

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015198.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 556 bp

gatttggtcgtttgcttgtctagcggcgctccaatccgacggtggcctctggtctcgtcggtgggtggtgggtgttgccggaaatgtgtggttgggtggtggtcagcggaggggctgcgcgatgggttctgatcacacagttgcttggtttgtggagggctgctgcgcggttgtcggggaagcatggctacatcagtttggaggtgagtatatggatttgggggaaactttgggtaatctggaattgatgtcctgtaggtgtgttattattggagtcgagcttaccgaagctgtgcaccctgactctattgcggctgaatccgagttgctggagctagcatcatggatgaggaaagttaatagctgcagtctattttgtcgttttgacaagacctcaaggacccgtagaaaagtggcgagcttgatgagagggaaaggaaggggaaagactgttattcctagtggaattggtgggaagagcctcgaggctcaacaacaccttgctgaaggaagacacaagggtggattgagcaccacgaacaagtccggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

184

Amino Acids

19.84

Weight (kDa)

8.48

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	483
AccII	CGCG	2 cut(s)	120, 168
AccIII	TCCGGA	1 cut(s)	546
AciI	CCGC	4 cut(s)	24, 107, 168, 312
AcuI	CTGAAG	1 cut(s)	526
AleI	CACNNNNGTG	1 cut(s)	520
AluBI	AGCT	5 cut(s)	281, 291, 335, 364, 421
AluI	AGCT	5 cut(s)	281, 291, 335, 364, 421
Alw21I	GWGCWC	2 cut(s)	298, 534
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	483
Aor13HI	TCCGGA	1 cut(s)	546
AoxI	GGCC	1 cut(s)	44
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	4 cut(s)	115, 160, 163, 364
AspLEI	GCGC	3 cut(s)	29, 120, 168
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	216
AsuNHI	GCTAGC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	298, 534
BbvI	GCAGC	4 cut(s)	102, 147, 150, 351
BccI	CCATC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	3 cut(s)	21, 336, 460
BfmI	CTRYAG	2 cut(s)	254, 365
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	6 cut(s)	25, 116, 161, 164, 313, 365
BlsI	GCNGC	6 cut(s)	26, 117, 162, 165, 314, 366
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	402
BmsI	GCATC	1 cut(s)	348
BmtI	GCTAGC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	546
BseGI	GGATG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	4 cut(s)	102, 147, 150, 351
Bsh1236I	CGCG	2 cut(s)	120, 168
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	298, 534
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	79, 547
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	298, 534
Bsp13I	TCCGGA	1 cut(s)	546
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	4 cut(s)	24, 107, 168, 312
BspANI	GGCC	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	546
BspFNI	CGCG	2 cut(s)	120, 168
BspLI	GGNNCC	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	369
BspOI	GCTAGC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	58
BssMI	GATC	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	42, 140, 452
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	337, 419
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	120, 168
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	3 cut(s)	29, 120, 168
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstSFI	CTRYAG	2 cut(s)	254, 365
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	2 cut(s)	120, 168
BstV1I	GCAGC	4 cut(s)	102, 147, 150, 351
BstV2I	GAAGAC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	337, 419
CfoI	GCGC	3 cut(s)	29, 120, 168
Cfr13I	GGNCC	1 cut(s)	400
CviAII	CATG	2 cut(s)	184, 343
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	400
FaeI	CATG	2 cut(s)	187, 346
FaiI	YATR	4 cut(s)	185, 211, 213, 344
FatI	CATG	2 cut(s)	183, 342
FbaI	TGATCA	1 cut(s)	131
Fnu4HI	GCNGC	6 cut(s)	25, 116, 161, 164, 313, 365
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	6 cut(s)	25, 116, 161, 164, 313, 365
FspBI	CTAG	3 cut(s)	21, 336, 460
GlaI	GCGC	3 cut(s)	28, 119, 167
GluI	GCNGC	6 cut(s)	25, 116, 161, 164, 313, 365
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	79, 547
HhaI	GCGC	3 cut(s)	29, 120, 168
Hin1II	CATG	2 cut(s)	187, 346
Hin6I	GCGC	3 cut(s)	27, 118, 166
HinP1I	GCGC	3 cut(s)	27, 118, 166
HinfI	GANTC	3 cut(s)	274, 303, 318
HpaII	CCGG	2 cut(s)	79, 547
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	38, 131, 323
Hpy188III	TCNNGA	2 cut(s)	240, 547
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	2 cut(s)	42, 61
HpyAV	CCTTC	2 cut(s)	433, 501
HpyCH4III	ACNGT	3 cut(s)	42, 140, 452
HpyCH4V	TGCA	2 cut(s)	296, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	187, 346
HspAI	GCGC	3 cut(s)	27, 118, 166
Kpn2I	TCCGGA	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	131
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	34, 332
LpnPI	CCDG	6 cut(s)	35, 92, 225, 266, 313, 315
Lsp1109I	GCAGC	4 cut(s)	102, 147, 150, 351
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	3 cut(s)	21, 336, 460
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	2 cut(s)	488, 523
MhlI	GDGCHC	2 cut(s)	298, 534
MluCI	AATT	2 cut(s)	243, 466
MlyI	GAGTC	2 cut(s)	283, 297
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	9 cut(s)	57, 103, 149, 195, 343, 404, 423, 479, 492
MroI	TCCGGA	1 cut(s)	546
MseI	TTAA	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	79, 547
MvnI	CGCG	2 cut(s)	120, 168
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	1 cut(s)	131
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	187, 346
NlaIV	GGNNCC	1 cut(s)	402
OliI	CACNNNNGTG	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	26, 117, 162, 165, 314, 366
PleI	GAGTC	2 cut(s)	282, 297
PpsI	GAGTC	2 cut(s)	282, 297
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	400
PspPPI	RGGWCCY	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	483
PstI	CTGCAG	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	520
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	6 cut(s)	25, 116, 161, 164, 313, 365
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	2 cut(s)	283, 297
SduI	GDGCHC	2 cut(s)	298, 534
SetI	ASST	9 cut(s)	206, 261, 283, 293, 337, 366, 396, 423, 502
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	2 cut(s)	254, 365
Sfr274I	CTCGAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	400
SlaI	CTCGAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	2 cut(s)	395, 483
SmoI	CTYRAG	2 cut(s)	395, 483
Sse9I	AATT	2 cut(s)	243, 466
SsiI	CCGC	4 cut(s)	24, 107, 168, 312
SspMI	CTAG	3 cut(s)	21, 336, 460
TaaI	ACNGT	3 cut(s)	42, 140, 452
TaqI	TCGA	2 cut(s)	277, 484
TasI	AATT	2 cut(s)	243, 466
TauI	GCSGC	2 cut(s)	27, 315
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseI	GCWGC	4 cut(s)	115, 160, 163, 364
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	483
XspI	CTAG	3 cut(s)	21, 336, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.