Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

17601872 .. 17603705

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCAGAAGCACGAGATCGAATAGAGAGGCAAGTTGATTACCCAGCCGCATTTCTCAATAGACGCTCGCATGGTATTTTACTTGACGAACCAGCAACACAGCACAATTTGTTTGGGTCTCCGGTTCAGAGAGTGCCATCGGAAGCTACAGGAGGACTTGGGTCAATTGGTCAAGGATCTATGACGGGAAGAGGTGGGCTTGTGAGGGGTAATTTCGGTATTCGGCGGACTGGTGGTGGTAGAAGAGGTCAAATTCAATTTAGATCGCCACAGGGACGAGAGAACATGAGCTTGGGTGTTACAAGGCGTGGAAGGGCTCGTGCTTCAAATTCTGTCTTACCTTCTTGGTATCCAAGAACGCCCCTCCGTGATATTTCTGCCGTTGTTAGGGCTATTGAGAGAAGGAGAGCTCGTATGGGAGAAGGTGTTGGCCGAGATATTGAGACCCCAACTCCACAACAACTTGGGGTTCTTGATTCTCTAGTACCGTTGTCAGGTGCTCATCTCGAGCACGACTATTCTATGGTTACTCCCGGTCCATCTATTGGATTCAAGCGTCCTTGGCCACCCTCAACTGCTAAAGTCCATCAGATTTTGCTCGACATCACAAGAGAAAACACAGGGGAAGAAGATGCCCTCACTCCAGAGAAGAAGCTCCTCAACTCTATTGATAAAGTGGAGAAGGTTGTGATGGAAGAGATTCAGAAAATGAAGAGCACTCCTAGTGCTAAAAGAGCAGAAAGGGAGAAAAGAGTTAGGACGCTAATGTCGATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.73

Weight (kDa)

10.9

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	766
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	2 cut(s)	48, 226
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	2 cut(s)	430, 563
AcsI	RAATTY	2 cut(s)	252, 328
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	3 cut(s)	387, 494, 545
AgsI	TTSAA	3 cut(s)	257, 327, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	146, 291, 410, 655
AluI	AGCT	4 cut(s)	146, 291, 410, 655
Alw21I	GWGCWC	4 cut(s)	412, 502, 513, 719
Alw26I	GTCTC	2 cut(s)	123, 437
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	430, 563
ApoI	RAATTY	2 cut(s)	252, 328
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	534
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	319, 412
BauI	CACGAG	2 cut(s)	12, 318
Bbv12I	GWGCWC	4 cut(s)	412, 502, 513, 719
BccI	CCATC	4 cut(s)	145, 547, 594, 685
BceAI	ACGGC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	123, 437
BfaI	CTAG	2 cut(s)	482, 723
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	622, 762
BoxI	GACNNNNGTC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	534
BsaI	GGTCTC	2 cut(s)	123, 437
BsaJI	CCNNGG	1 cut(s)	560
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	6 cut(s)	397, 411, 427, 436, 441, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	387, 494, 545
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	387, 494, 545
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	647
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	432, 565
BsiHKAI	GWGCWC	4 cut(s)	412, 502, 513, 719
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	2 cut(s)	122, 534
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	387, 494, 545
BsmAI	GTCTC	2 cut(s)	123, 437
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	432, 565
Bso31I	GGTCTC	2 cut(s)	123, 437
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	5 cut(s)	319, 412, 502, 513, 719
Bsp143I	GATC	3 cut(s)	16, 176, 263
BspACI	CCGC	2 cut(s)	48, 226
BspANI	GGCC	2 cut(s)	432, 565
BspPI	GGATC	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	707
BspTNI	GGTCTC	2 cut(s)	123, 437
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	3 cut(s)	16, 176, 263
BssSI	CACGAG	2 cut(s)	12, 318
BssT1I	CCWWGG	1 cut(s)	560
Bst2BI	CACGAG	2 cut(s)	12, 318
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	4 cut(s)	184, 238, 690, 707
BstC8I	GCNNGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	19, 179, 266
BstMAI	GTCTC	2 cut(s)	123, 437
BstMBI	GATC	3 cut(s)	16, 176, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	562, 734
BstPAI	GACNNNNGTC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	432, 565
Cac8I	GCNNGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	3 cut(s)	72, 545, 769
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	2 cut(s)	71, 286
CviQI	GTAC	1 cut(s)	485
DpnI	GATC	3 cut(s)	18, 178, 265
DpnII	GATC	3 cut(s)	16, 176, 263
DrdI	GACNNNNNNGTC	1 cut(s)	766
DseDI	GACNNNNNNGTC	1 cut(s)	766
EaeI	YGGCCR	2 cut(s)	430, 563
Eam1104I	CTCTTC	4 cut(s)	184, 238, 690, 707
EarI	CTCTTC	4 cut(s)	184, 238, 690, 707
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	560
Eco24I	GRGCYC	2 cut(s)	319, 412
Eco31I	GGTCTC	2 cut(s)	123, 437
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	560
EcoT38I	GRGCYC	2 cut(s)	319, 412
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	2 cut(s)	74, 289
FaiI	YATR	5 cut(s)	72, 182, 287, 416, 524
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	70, 285
Fnu4HI	GCNGC	1 cut(s)	48
FriOI	GRGCYC	2 cut(s)	319, 412
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	482, 723
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	432, 565
HapII	CCGG	2 cut(s)	122, 534
HgaI	GACGC	3 cut(s)	72, 545, 769
Hin1II	CATG	2 cut(s)	74, 289
HinfI	GANTC	3 cut(s)	476, 549, 700
HpaII	CCGG	2 cut(s)	122, 534
Hpy188I	TCNGA	4 cut(s)	129, 142, 591, 705
Hpy188III	TCNNGA	3 cut(s)	473, 506, 644
HpyAV	CCTTC	5 cut(s)	306, 351, 396, 416, 676
HpyCH4III	ACNGT	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	562, 734
Hsp92II	CATG	2 cut(s)	74, 289
Kzo9I	GATC	3 cut(s)	16, 176, 263
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	1 cut(s)	660
LweI	GCATC	2 cut(s)	622, 762
MaeI	CTAG	2 cut(s)	482, 723
MaeIII	GTNAC	2 cut(s)	298, 526
MalI	GATC	3 cut(s)	18, 178, 265
MboI	GATC	3 cut(s)	16, 176, 263
MboII	GAAGA	7 cut(s)	201, 255, 638, 641, 661, 707, 724
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	5 cut(s)	319, 412, 502, 513, 719
MlsI	TGGCCA	1 cut(s)	565
MluCI	AATT	6 cut(s)	106, 165, 211, 252, 257, 328
MluNI	TGGCCA	1 cut(s)	565
MnlI	CCTC	9 cut(s)	21, 146, 185, 198, 239, 374, 580, 647, 668
Mox20I	TGGCCA	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	565
Msp20I	TGGCCA	1 cut(s)	565
MspI	CCGG	2 cut(s)	122, 534
MspR9I	CCNGG	1 cut(s)	534
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	562, 734
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	16, 176, 263
NlaIII	CATG	2 cut(s)	74, 289
NmeAIII	GCCGAG	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	767
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	476, 549, 700
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	49
PshAI	GACNNNNGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	707
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	3 cut(s)	16, 176, 263
Sau96I	GGNCC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	5 cut(s)	319, 412, 502, 513, 719
SfaNI	GCATC	2 cut(s)	622, 762
SfcI	CTRYAG	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	6 cut(s)	106, 165, 211, 252, 257, 328
SsiI	CCGC	2 cut(s)	48, 226
SspMI	CTAG	2 cut(s)	482, 723
SstI	GAGCTC	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	1 cut(s)	489
TaqI	TCGA	4 cut(s)	19, 507, 600, 770
TasI	AATT	6 cut(s)	106, 165, 211, 252, 257, 328
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	476, 549, 700
TspDTI	ATGAA	1 cut(s)	725
TspGWI	ACGGA	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	252, 328
XhoI	CTCGAG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	482, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.