Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001539.1

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

18580 .. 20522

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001539.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtatgacatgttaaaaaggcagggaggcattgtaccagagagattattgggaccaattgcaaaagtagataagcttttcagttggcccatctcctctgcaatagtgcccattaagcaaagtactttagttgatgaaagatttcccaaggactgtgggatgcctcctgtcagattgtttgtctcgagattaaggtacaccagcttcaacagtgagccaatctctgatcaaacgtcaccgtggaatcttgccaaagaagctgttatctcaaaggctgatgaacctgagaaaagagaggttgcaaatgatgcttctcctgagcatcaagttctcgctgctactccttcaaccattaagaagagaccttgcccacctagttctgttcttaaagtgcacaaaattctgctagaggtggctaatcagcctgatgagggagagttcgttacaccacagaagaagctactgaactcaattgacaaagttgaaaaggtggtgttggaagaacttcagaggctgaagaggaccccgagtgctaagaaggcagagagggaaagaaaggttcgaactttgatgtcaatgcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.94

Weight (kDa)

9.61

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	491, 536
AfaI	GTAC	3 cut(s)	36, 124, 197
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	208, 348, 485
AluBI	AGCT	4 cut(s)	76, 204, 260, 460
AluI	AGCT	4 cut(s)	76, 204, 260, 460
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	187, 355
Alw44I	GTGCAC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	514
Ama87I	CYCGRG	2 cut(s)	184, 526
AoxI	GGCC	1 cut(s)	86
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	399
Asp700I	GAANNNNTTC	2 cut(s)	141, 504
AspS9I	GGNCC	3 cut(s)	53, 87, 522
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	562
AvaI	CYCGRG	2 cut(s)	184, 526
AvaII	GGWCC	2 cut(s)	53, 522
BaeGI	GKGCMC	2 cut(s)	111, 396
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	187, 355
BfaI	CTAG	2 cut(s)	375, 407
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmcAI	AGTACT	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	53, 522
BmeT110I	CYCGRG	2 cut(s)	184, 526
BmgT120I	GGNCC	3 cut(s)	53, 87, 522
BmiI	GGNNCC	2 cut(s)	54, 524
BmsI	GCATC	3 cut(s)	150, 298, 331
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	147, 239
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	147, 239
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	276, 309
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	111, 396
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	2 cut(s)	184, 526
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	187, 355
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	2 cut(s)	184, 526
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1286I	GDGCHC	2 cut(s)	111, 396
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	2 cut(s)	277, 310
BspLI	GGNNCC	2 cut(s)	54, 524
BspT104I	TTCGAA	1 cut(s)	562
BspTNI	GGTCTC	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	147, 239
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	155, 212, 240
Bst6I	CTCTTC	2 cut(s)	353, 512
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	562
BstDEI	CTNAG	3 cut(s)	285, 318, 534
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	187, 355
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 257, 308, 539
BstNSI	RCATGY	1 cut(s)	13
BstSLI	GKGCMC	2 cut(s)	111, 396
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	53, 87, 522
Csp6I	GTAC	3 cut(s)	35, 123, 196
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	3 cut(s)	35, 123, 196
DdeI	CTNAG	3 cut(s)	285, 318, 534
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	353, 512
EarI	CTCTTC	2 cut(s)	353, 512
Eco130I	CCWWGG	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	53, 522
Eco57I	CTGAAG	2 cut(s)	491, 536
Eco88I	CYCGRG	2 cut(s)	184, 526
EcoO109I	RGGNCCY	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	13
FaiI	YATR	2 cut(s)	6, 11
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	9
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	375, 407
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	198, 394
Hpy188I	TCNGA	3 cut(s)	173, 226, 510
Hpy188III	TCNNGA	3 cut(s)	184, 186, 317
Hpy8I	GTNNAC	2 cut(s)	198, 394
HpyAV	CCTTC	2 cut(s)	354, 532
HpyCH4III	ACNGT	3 cut(s)	155, 212, 240
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	62, 101, 302, 394
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 257, 308, 539
HpyF3I	CTNAG	3 cut(s)	285, 318, 534
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	8, 51, 180, 214, 297, 330, 438
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	3 cut(s)	150, 298, 331
MaeI	CTAG	2 cut(s)	375, 407
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	234, 442
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	370, 466, 512, 529
MfeI	CAATTG	2 cut(s)	57, 471
MhlI	GDGCHC	2 cut(s)	111, 396
MluCI	AATT	3 cut(s)	57, 399, 471
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	9 cut(s)	20, 106, 174, 289, 403, 424, 504, 513, 540
MroXI	GAANNNNTTC	2 cut(s)	141, 504
MseI	TTAA	5 cut(s)	14, 114, 191, 354, 387
MunI	CAATTG	2 cut(s)	57, 471
MwoI	GCNNNNNNNGC	4 cut(s)	115, 257, 308, 539
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	54, 524
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	184
PciI	ACATGT	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	141, 504
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	522
PscI	ACATGT	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	54, 524
PspPI	GGNCC	3 cut(s)	53, 87, 522
PspPPI	RGGWCCY	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	514
RsaI	GTAC	3 cut(s)	36, 124, 197
RsaNI	GTAC	3 cut(s)	35, 123, 196
SaqAI	TTAA	5 cut(s)	14, 114, 191, 354, 387
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	3 cut(s)	53, 87, 522
ScaI	AGTACT	1 cut(s)	124
SduI	GDGCHC	2 cut(s)	111, 396
SfaNI	GCATC	3 cut(s)	150, 298, 331
Sfr274I	CTCGAG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	562
SinI	GGWCC	2 cut(s)	53, 522
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	3 cut(s)	57, 399, 471
SspMI	CTAG	2 cut(s)	375, 407
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	155, 212, 240
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	185, 562
TasI	AATT	3 cut(s)	57, 399, 471
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	5 cut(s)	14, 114, 191, 354, 387
Tru9I	TTAA	5 cut(s)	14, 114, 191, 354, 387
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	150, 294
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	53, 522
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	184
XmnI	GAANNNNTTC	2 cut(s)	141, 504
XspI	CTAG	2 cut(s)	375, 407
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.