Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

62167843 .. 62169358

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTGCCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCGATTACCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGCGGAGAATGACAAAACTGCAGAGGATCAATTTCCATCTCTACAAGTTCAGGATGCTTCTCCTGAGTATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTAGTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTACTGAAATCAATTGACAAAGTTGAGAAGGTGGTGTTGGAAAAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.81

Weight (kDa)

10.14

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	231
AcuI	CTGAAG	2 cut(s)	323, 368
AfiI	CCNNNNNNNGG	2 cut(s)	66, 263
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	77, 292
AluI	AGCT	2 cut(s)	77, 292
Alw21I	GWGCWC	2 cut(s)	79, 228
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	57, 354
AsuII	TTCGAA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	79, 228
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	207, 239
BfmI	CTRYAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	57, 354
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bpu14I	TTCGAA	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 263
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	66, 263
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	79, 228
BsiHKCI	CYCGRG	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	66, 263
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	79, 228
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	356
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	55
Bst6I	CTCTTC	3 cut(s)	67, 185, 344
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	150, 366
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	57, 354
CviJI	RGCY	6 cut(s)	59, 77, 248, 256, 292, 346
CviKI_1	RGCY	6 cut(s)	59, 77, 248, 256, 292, 346
DdeI	CTNAG	2 cut(s)	150, 366
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	3 cut(s)	67, 185, 344
EarI	CTCTTC	3 cut(s)	67, 185, 344
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	323, 368
Eco88I	CYCGRG	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	207, 239
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	137, 149
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	18, 186, 313, 364
HpyCH4V	TGCA	2 cut(s)	107, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	150, 366
Kzo9I	GATC	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	40, 67, 122, 162, 270
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	207, 239
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	84, 202, 298, 361
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	79, 228
MluCI	AATT	3 cut(s)	116, 231, 303
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	8 cut(s)	39, 60, 103, 235, 256, 336, 345, 372
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	186, 219
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	2 cut(s)	57, 354
PspPPI	RGGWCCY	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	186, 219
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	2 cut(s)	57, 354
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	79, 228
SetI	ASST	7 cut(s)	79, 199, 208, 246, 294, 324, 393
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	354
Sse9I	AATT	3 cut(s)	116, 231, 303
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	207, 239
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	53
TaqI	TCGA	1 cut(s)	394
TasI	AATT	3 cut(s)	116, 231, 303
Tru1I	TTAA	2 cut(s)	186, 219
Tru9I	TTAA	2 cut(s)	186, 219
TseI	GCWGC	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	23
VneI	GTGCAC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	207, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.