Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Forward (+)

38623469 .. 38626269

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG343200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCGGTGGAGTCTAGATTCAGGCTTGAGAGGCCGTTTGACGTTGCGGAGGCCTTTTCTCAAAGGCGATCTGGCTCGCTTGCTGTTCTAATCGATCAGCGCGTGGAGTCGTTGGAATTGCCGGCGAGGCGGAGGGCGTTAGCGACACCGGTGCATCAGAGACGGCTAGGGTTATGGGCCGTAGGAGGTATGAGGACACCGAGAGCCGCGATTGGTCAACAGAATGTGCTGCTGGCCGGAAGTTCTAGCCGGAGAAGGGGACGGGGATCGAACAGTGTGTTGCCTTCTTGGTATCCAAGAACCCCTCTCTGTGATATAACTGCTATTATCAGAGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCAGAGGGTCAATTTCCATCTCTACAAGTTCAGGATGCTTCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTAGTTCTGTTCTTAAAGTGCACAAAATTCTTCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTTGTTACACCACAGAAGAAGCTACTGAACTCAATTGACAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.85

Weight (kDa)

10.93

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	102, 209
AciI	CCGC	3 cut(s)	47, 130, 207
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	599, 644
AfiI	CCNNNNNNNGG	3 cut(s)	256, 342, 539
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	2 cut(s)	353, 568
AluI	AGCT	2 cut(s)	353, 568
Alw21I	GWGCWC	2 cut(s)	355, 504
Alw26I	GTCTC	2 cut(s)	154, 463
Alw44I	GTGCAC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	4 cut(s)	32, 51, 177, 234
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	2 cut(s)	229, 443
ApoI	RAATTY	1 cut(s)	507
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	177, 630
AsuHPI	GGTGA	1 cut(s)	374
AsuII	TTCGAA	1 cut(s)	670
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	2 cut(s)	355, 504
BbvI	GCAGC	2 cut(s)	216, 430
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	3 cut(s)	19, 164, 179
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	154, 463
BfaI	CTAG	5 cut(s)	15, 167, 246, 483, 515
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	207, 230, 444
BlsI	GCNGC	3 cut(s)	208, 231, 445
Bme18I	GGWCC	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	177, 630
BmiI	GGNNCC	1 cut(s)	632
BmsI	GCATC	3 cut(s)	163, 406, 439
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 342, 539
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseCI	ATCGAT	1 cut(s)	93
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	256, 342, 539
BseMII	CTCAG	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	358, 380
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	2 cut(s)	216, 430
Bsh1236I	CGCG	2 cut(s)	102, 209
BshFI	GGCC	4 cut(s)	34, 53, 179, 236
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	355, 504
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	5 cut(s)	5, 122, 149, 237, 250
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	256, 342, 539
BsmAI	GTCTC	2 cut(s)	154, 463
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	4 cut(s)	34, 53, 179, 236
Bso31I	GGTCTC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	634
Bsp119I	TTCGAA	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	355, 504
Bsp143I	GATC	3 cut(s)	68, 94, 266
BspACI	CCGC	3 cut(s)	47, 130, 207
BspANI	GGCC	4 cut(s)	34, 53, 179, 236
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	102, 209
BspLI	GGNNCC	1 cut(s)	632
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	670
BspTNI	GGTCTC	1 cut(s)	463
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssMI	GATC	3 cut(s)	68, 94, 266
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	3 cut(s)	343, 461, 620
BstBI	TTCGAA	1 cut(s)	670
BstC8I	GCNNGC	5 cut(s)	77, 81, 123, 234, 355
BstDEI	CTNAG	2 cut(s)	426, 642
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	102, 209
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	71, 97, 269
BstMAI	GTCTC	2 cut(s)	154, 463
BstMBI	GATC	3 cut(s)	68, 94, 266
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 127, 647
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	504
BstUI	CGCG	2 cut(s)	102, 209
BstV1I	GCAGC	2 cut(s)	216, 430
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	34, 53, 179, 236
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	5 cut(s)	77, 81, 123, 234, 355
CaiI	CAGNNNCTG	1 cut(s)	622
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	2 cut(s)	177, 630
ClaI	ATCGAT	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	426, 642
DpnI	GATC	3 cut(s)	70, 96, 268
DpnII	GATC	3 cut(s)	68, 94, 266
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	343, 461, 620
EarI	CTCTTC	3 cut(s)	343, 461, 620
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	599, 644
Eco88I	CYCGRG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	3 cut(s)	175, 191, 317
FaqI	GGGAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	207, 230, 444
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	3 cut(s)	207, 230, 444
FspBI	CTAG	5 cut(s)	15, 167, 246, 483, 515
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	3 cut(s)	207, 230, 444
HaeIII	GGCC	4 cut(s)	34, 53, 179, 236
HapII	CCGG	5 cut(s)	5, 122, 149, 237, 250
HhaI	GCGC	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	3 cut(s)	11, 18, 107
HpaII	CCGG	5 cut(s)	5, 122, 149, 237, 250
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	218, 502
Hpy188I	TCNGA	3 cut(s)	159, 332, 618
Hpy188III	TCNNGA	4 cut(s)	15, 413, 425, 515
Hpy8I	GTNNAC	2 cut(s)	218, 502
HpyAV	CCTTC	5 cut(s)	249, 294, 462, 589, 640
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	154, 383, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 127, 647
HpyF3I	CTNAG	2 cut(s)	426, 642
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	68, 94, 266
LguI	GCTCTTC	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	216, 430
LweI	GCATC	3 cut(s)	163, 406, 439
MaeI	CTAG	5 cut(s)	15, 167, 246, 483, 515
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	3 cut(s)	70, 96, 268
MboI	GATC	3 cut(s)	68, 94, 266
MboII	GAAGA	6 cut(s)	360, 478, 503, 574, 620, 637
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	2 cut(s)	355, 504
MluCI	AATT	4 cut(s)	116, 392, 507, 579
MlyI	GAGTC	2 cut(s)	20, 116
MmeI	TCCRAC	2 cut(s)	93, 585
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	2 cut(s)	462, 495
MspI	CCGG	5 cut(s)	5, 122, 149, 237, 250
MunI	CAATTG	1 cut(s)	579
MvnI	CGCG	2 cut(s)	102, 209
MwoI	GCNNNNNNNGC	3 cut(s)	31, 127, 647
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	68, 94, 266
NgoMIV	GCCGGC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	632
NspV	TTCGAA	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	208, 231, 445
PleI	GAGTC	2 cut(s)	19, 115
PpsI	GAGTC	2 cut(s)	19, 115
PpuMI	RGGWCCY	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	632
PspPI	GGNCC	2 cut(s)	177, 630
PspPPI	RGGWCCY	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	622
SacI	GAGCTC	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	462, 495
SatI	GCNGC	3 cut(s)	207, 230, 444
Sau3AI	GATC	3 cut(s)	68, 94, 266
Sau96I	GGNCC	2 cut(s)	177, 630
SchI	GAGTC	2 cut(s)	20, 116
SduI	GDGCHC	2 cut(s)	355, 504
SetI	ASST	9 cut(s)	45, 190, 355, 475, 484, 522, 570, 600, 669
SfaNI	GCATC	3 cut(s)	163, 406, 439
SfcI	CTRYAG	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	670
SgrAI	CRCCGGYG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	116, 392, 507, 579
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	47, 130, 207
SspMI	CTAG	5 cut(s)	15, 167, 246, 483, 515
SstI	GAGCTC	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	93, 269, 670
TasI	AATT	4 cut(s)	116, 392, 507, 579
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	462, 495
Tru9I	TTAA	2 cut(s)	462, 495
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	2 cut(s)	229, 443
TspRI	CASTG	1 cut(s)	280
VneI	GTGCAC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	630
XapI	RAATTY	1 cut(s)	507
XbaI	TCTAGA	2 cut(s)	14, 514
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	5 cut(s)	15, 167, 246, 483, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.