Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Forward (+)

12284549 .. 12287392

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCGGCTGAGTCGCGATTCCGATTGGTGAGGCCGTTCGACATCGCCGAGGCCTTCGCTCAGAGGCGGAGCGGCGGCGTCAGGATTCTTGTGGACGAGCGTCCGGAGCCGACGAGGCTTAGGGCGGCGGCTGCGGTTACTCCGGTGACTCAGCGGCCTCTAGGGATTTGGGCGACGGGCGGTGGAGTGGCACCGAGCAGTTTGAGGACTCCGGGTACCGGAATCGGGCGTGAACGTAGTGCGTTTGGGATGGTGACTCCCGCCAGAGAGAATACGCAGCCGGTCGGAGGTTCTAGCCGGAGAAGGGCACGGAGGACGAACAGTGTGTTGCCTTCTTGGTACCCAAGAACCCCTCTGCGTGATATAACTGCGATTACTAGGGCCATTGAGAGGAGAAGATCTCGCTTGGGTGAGGAGAATGGCTCTACTGCACAGGTTCAAGTTCCGTCTCTACATGGTCAGGATGCTCCTCCTGAGCATCAAGTCCTTGCTGCCACTCCATCAACCATTAAGAAGAGACCTCGCCCACCTTCTGTTCTTAAAGTGCACAAAGTTCTGCTAGAGGTGGCCAATCAGCCTGATGAGGGAGAGTTTCTTACACCACAGAAGAAGCTGCTGAACTCCATTGACAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGGACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.22

Weight (kDa)

11.52

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	724
Acc65I	GGTACC	2 cut(s)	215, 339
AccB1I	GGYRCC	3 cut(s)	190, 215, 339
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	9 cut(s)	67, 72, 75, 125, 128, 134, 154, 180, 261
AcoI	YGGCCR	1 cut(s)	567
AcuI	CTGAAG	2 cut(s)	644, 689
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	217, 341
AfiI	CCNNNNNNNGG	6 cut(s)	218, 225, 287, 304, 390, 584
AgsI	TTSAA	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	1 cut(s)	613
AluI	AGCT	1 cut(s)	613
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	453, 511
Alw44I	GTGCAC	1 cut(s)	545
AlwNI	CAGNNNCTG	1 cut(s)	667
Ama87I	CYCGRG	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	5 cut(s)	32, 51, 155, 381, 567
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	4 cut(s)	131, 277, 491, 613
Asp700I	GAANNNNTTC	1 cut(s)	657
Asp718I	GGTACC	2 cut(s)	215, 339
AspS9I	GGNCC	2 cut(s)	381, 675
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	4 cut(s)	40, 157, 265, 422
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	675
BaeGI	GKGCMC	2 cut(s)	310, 549
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	3 cut(s)	190, 215, 339
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	118, 289, 478, 600
BccI	CCATC	2 cut(s)	244, 508
BceAI	ACGGC	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	453, 511
BfaI	CTAG	4 cut(s)	161, 294, 378, 560
BglI	GCCNNNNNGGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	9 cut(s)	73, 76, 126, 129, 132, 155, 278, 492, 614
BlsI	GCNGC	9 cut(s)	74, 77, 127, 130, 133, 156, 279, 493, 615
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	2 cut(s)	381, 675
BmiI	GGNNCC	5 cut(s)	108, 192, 217, 341, 677
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	454, 487
BoxI	GACNNNNGTC	1 cut(s)	99
BplI	GAGNNNNNCTC	4 cut(s)	385, 417, 407, 439
Bpu10I	CCTNAGC	2 cut(s)	119, 474
BpuMI	CCSGG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	3 cut(s)	103, 142, 218
Bsc4I	CCNNNNNNNGG	6 cut(s)	218, 225, 287, 304, 390, 584
Bse118I	RCCGGY	2 cut(s)	4, 280
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	255, 469
BseLI	CCNNNNNNNGG	6 cut(s)	218, 225, 287, 304, 390, 584
BseMII	CTCAG	3 cut(s)	74, 164, 465
BseRI	GAGGAG	3 cut(s)	406, 428, 459
BseSI	GKGCMC	2 cut(s)	310, 549
BseXI	GCAGC	4 cut(s)	118, 289, 478, 600
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	5 cut(s)	34, 53, 157, 383, 569
BshNI	GGYRCC	3 cut(s)	190, 215, 339
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	7 cut(s)	5, 104, 143, 212, 219, 281, 298
BslI	CCNNNNNNNGG	6 cut(s)	218, 225, 287, 304, 390, 584
BsmAI	GTCTC	2 cut(s)	453, 511
BsmBI	CGTCTC	1 cut(s)	453
BsnI	GGCC	5 cut(s)	34, 53, 157, 383, 569
Bso31I	GGTCTC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	679
Bsp1286I	GDGCHC	2 cut(s)	310, 549
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	398
Bsp68I	TCGCGA	1 cut(s)	16
BspACI	CCGC	9 cut(s)	67, 72, 75, 125, 128, 134, 154, 180, 261
BspANI	GGCC	5 cut(s)	34, 53, 157, 383, 569
BspCNI	CTCAG	3 cut(s)	73, 163, 466
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	5 cut(s)	108, 192, 217, 341, 677
BspT107I	GGYRCC	3 cut(s)	190, 215, 339
BspTNI	GGTCTC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	2 cut(s)	4, 280
BssAI	RCCGGY	2 cut(s)	4, 280
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	398
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	509, 665
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	6 cut(s)	9, 60, 119, 150, 474, 687
BstF5I	GGATG	2 cut(s)	255, 469
BstFNI	CGCG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	2 cut(s)	453, 511
BstMBI	GATC	1 cut(s)	398
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 115, 131, 692
BstPAI	GACNNNNGTC	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	2 cut(s)	310, 549
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	4 cut(s)	118, 289, 478, 600
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	5 cut(s)	34, 53, 157, 383, 569
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	255, 469
BtsIMutI	CAGTG	1 cut(s)	328
BtuMI	TCGCGA	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	667
Cfr10I	RCCGGY	2 cut(s)	4, 280
Cfr13I	GGNCC	2 cut(s)	381, 675
CseI	GACGC	2 cut(s)	67, 89
Csp6I	GTAC	2 cut(s)	216, 340
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	2 cut(s)	216, 340
DdeI	CTNAG	6 cut(s)	9, 60, 119, 150, 474, 687
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	724
DseDI	GACNNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	509, 665
EarI	CTCTTC	2 cut(s)	509, 665
EciI	GGCGGA	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	675
Eco57I	CTGAAG	2 cut(s)	644, 689
Eco88I	CYCGRG	1 cut(s)	679
EcoO109I	RGGNCCY	1 cut(s)	675
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	1 cut(s)	458
FaiI	YATR	2 cut(s)	365, 456
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	9 cut(s)	73, 76, 126, 129, 132, 155, 278, 492, 614
FokI	GGATG	2 cut(s)	262, 476
Fsp4HI	GCNGC	9 cut(s)	73, 76, 126, 129, 132, 155, 278, 492, 614
FspBI	CTAG	4 cut(s)	161, 294, 378, 560
GluI	GCNGC	9 cut(s)	73, 76, 126, 129, 132, 155, 278, 492, 614
HaeIII	GGCC	5 cut(s)	34, 53, 157, 383, 569
HapII	CCGG	7 cut(s)	5, 104, 143, 212, 219, 281, 298
HgaI	GACGC	2 cut(s)	67, 89
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	458
HinfI	GANTC	7 cut(s)	11, 18, 85, 148, 208, 222, 256
HpaII	CCGG	7 cut(s)	5, 104, 143, 212, 219, 281, 298
HphI	GGTGA	4 cut(s)	40, 157, 265, 422
Hpy166II	GTNNAC	3 cut(s)	94, 233, 547
Hpy188I	TCNGA	5 cut(s)	23, 63, 287, 663, 717
Hpy188III	TCNNGA	5 cut(s)	15, 82, 104, 461, 473
Hpy8I	GTNNAC	3 cut(s)	94, 233, 547
Hpy99I	CGWCG	2 cut(s)	115, 178
HpyAV	CCTTC	6 cut(s)	64, 297, 342, 540, 634, 685
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	431, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 115, 131, 692
HpyF3I	CTNAG	6 cut(s)	9, 60, 119, 150, 474, 687
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	103
KpnI	GGTACC	2 cut(s)	219, 343
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	3 cut(s)	69, 106, 472
Lsp1109I	GCAGC	4 cut(s)	118, 289, 478, 600
LweI	GCATC	2 cut(s)	454, 487
MaeI	CTAG	4 cut(s)	161, 294, 378, 560
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	3 cut(s)	136, 145, 253
MalI	GATC	1 cut(s)	400
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	398
MboII	GAAGA	5 cut(s)	408, 526, 619, 665, 682
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	310, 549
MlsI	TGGCCA	1 cut(s)	569
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	4 cut(s)	20, 142, 202, 250
MmeI	TCCRAC	2 cut(s)	265, 630
Mox20I	TGGCCA	1 cut(s)	569
MroI	TCCGGA	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	2 cut(s)	510, 540
Msp20I	TGGCCA	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	7 cut(s)	5, 104, 143, 212, 219, 281, 298
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	106, 115, 131, 692
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	398
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	5 cut(s)	108, 192, 217, 341, 677
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	145, 253
NruI	TCGCGA	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	18, 85, 222
PkrI	GCNGC	9 cut(s)	74, 77, 127, 130, 133, 156, 279, 493, 615
PleI	GAGTC	4 cut(s)	19, 142, 202, 250
PpsI	GAGTC	4 cut(s)	19, 142, 202, 250
PpuMI	RGGWCCY	1 cut(s)	675
PshAI	GACNNNNGTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	675
PspN4I	GGNNCC	5 cut(s)	108, 192, 217, 341, 677
PspPI	GGNCC	2 cut(s)	381, 675
PspPPI	RGGWCCY	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	398
RruI	TCGCGA	1 cut(s)	16
RsaI	GTAC	2 cut(s)	217, 341
RsaNI	GTAC	2 cut(s)	216, 340
SaqAI	TTAA	2 cut(s)	510, 540
SatI	GCNGC	9 cut(s)	73, 76, 126, 129, 132, 155, 278, 492, 614
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	2 cut(s)	381, 675
SchI	GAGTC	4 cut(s)	20, 142, 202, 250
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	310, 549
SetI	ASST	9 cut(s)	238, 292, 438, 523, 532, 567, 615, 645, 714
SfaNI	GCATC	2 cut(s)	454, 487
SinI	GGWCC	1 cut(s)	675
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	9 cut(s)	67, 72, 75, 125, 128, 134, 154, 180, 261
SspMI	CTAG	4 cut(s)	161, 294, 378, 560
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	39
TauI	GCSGC	5 cut(s)	75, 78, 128, 131, 157
TfiI	GAWTC	3 cut(s)	18, 85, 222
Tru1I	TTAA	2 cut(s)	510, 540
Tru9I	TTAA	2 cut(s)	510, 540
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	145, 253
TseI	GCWGC	4 cut(s)	131, 277, 491, 613
Tsp45I	GTSAC	2 cut(s)	145, 253
TspGWI	ACGGA	2 cut(s)	325, 435
TspRI	CASTG	1 cut(s)	328
VneI	GTGCAC	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	4 cut(s)	161, 294, 378, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.