AT3G57860

negative regulation of ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001662
Physical Location & Seq
Forward (+)
21426285 .. 21428340
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57860.1

Sequence Viewer

Length: 732 bp
ATGCCAGAAGCAAGAGATCGAACCGAGAGGCCTGTGGATTACTCGACTATATTTGCCAACCGACGGAGACATGGTATTTTACTTGACGAGCCAGATTCACGGCTTAGTTTGATTGAATCTCCGGTGAATCCAGATATTGGGTCTATTGGTGGAACGGGCGGGCTTGTGAGAGGCAATTTCACTACATGGAGGCCTGGTAATGGCAGAGGTGGTCACACTCCATTTAGATTGCCACAGGGAAGAGAGAATATGCCCATAGTGACCGCTAGGCGTGGAAGAGGTGGTGGTTTGTTGCCTTCTTGGTATCCAAGAACACCTCTACGCGACATAACTCATATTGTGCGGGCTATTGAGAGAAGAAGAGGAGCTGGGACTGGAGGAGACGATGGCCGAGTTATTGAGATCCCAACTCATCGACAAGTTGGTGTTCTTGAATCTCCAGTACCACTGTCAGGAGAACACAAATGCTCGATGGTCACTCCTGGACCATCTGTGGGATTCAAGCGTAGTTGCCCACCATCAACTGCTAAAGTTCAAAAGATGTTACTTGACATCACTAAAGAGATAGCTGAGGAAGAAGCTGGCTTCATCACACCCGAGAAGAAGCTACTCAATTCTATTGACAAAGTTGAGAAAATTGTGATGGCGGAGATCCAGAAGTTGAAGAGCACTCCTCAAGCTAAAAGGGAAGAGCGGGAGAAGAGGGTGCGGACTTTAATGACTATGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.99

Weight (kDa)

10.25

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 694
AccII CGCG 1 cut(s) 324
AciI CCGC 6 cut(s) 159, 264, 343, 647, 694, 709
AclWI GGATC 2 cut(s) 397, 646
AcoI YGGCCR 1 cut(s) 388
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 5 cut(s) 63, 137, 200, 452, 494
AgsI TTSAA 5 cut(s) 116, 434, 502, 536, 664
AjnI CCWGG 2 cut(s) 193, 481
AluBI AGCT 5 cut(s) 368, 569, 581, 607, 680
AluI AGCT 5 cut(s) 368, 569, 581, 607, 680
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 2 cut(s) 61, 375
AlwI GGATC 2 cut(s) 397, 646
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 3 cut(s) 29, 191, 388
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 570
BccI CCATC 5 cut(s) 380, 466, 496, 526, 637
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 195, 483
BciVI GTATCC 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 61, 375
BfaI CTAG 1 cut(s) 267
BfuI GTATCC 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 195, 483
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 485
BmrFI CCNGG 2 cut(s) 195, 483
BplI GAGNNNNNCTC 2 cut(s) 658, 690
BpmI CTGGAG 2 cut(s) 396, 423
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 181, 211
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 137, 200, 452, 494
Bse1I ACTGG 2 cut(s) 379, 440
BseBI CCWGG 2 cut(s) 195, 483
BseLI CCNNNNNNNGG 5 cut(s) 63, 137, 200, 452, 494
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 2 cut(s) 379, 440
BseRI GAGGAG 3 cut(s) 378, 393, 663
BseYI CCCAGC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 31, 193, 390
BsiHKAI GWGCWC 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 5 cut(s) 63, 137, 200, 452, 494
BsmAI GTCTC 2 cut(s) 61, 375
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 3 cut(s) 31, 193, 390
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 3 cut(s) 16, 402, 651
BspACI CCGC 6 cut(s) 159, 264, 343, 647, 694, 709
BspANI GGCC 3 cut(s) 31, 193, 390
BspCNI CTCAG 1 cut(s) 562
BspFNI CGCG 1 cut(s) 324
BspPI GGATC 2 cut(s) 397, 646
BspQI GCTCTTC 2 cut(s) 659, 684
BsrBI CCGCTC 1 cut(s) 694
BsrI ACTGG 2 cut(s) 379, 440
BssMI GATC 3 cut(s) 16, 402, 651
Bst2UI CCWGG 2 cut(s) 195, 483
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 6 cut(s) 235, 271, 355, 659, 684, 695
BstC8I GCNNGC 3 cut(s) 161, 345, 583
BstDEI CTNAG 2 cut(s) 104, 570
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 3 cut(s) 19, 405, 654
BstMAI GTCTC 2 cut(s) 61, 375
BstMBI GATC 3 cut(s) 16, 402, 651
BstNI CCWGG 2 cut(s) 195, 483
BstSCI CCNGG 2 cut(s) 193, 481
BstUI CGCG 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 402, 651
BstYI RGATCY 2 cut(s) 402, 651
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 3 cut(s) 31, 193, 390
BtsIMutI CAGTG 1 cut(s) 446
Cac8I GCNNGC 3 cut(s) 161, 345, 583
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 443
CviAII CATG 2 cut(s) 71, 186
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 2 cut(s) 104, 570
DpnI GATC 3 cut(s) 18, 404, 653
DpnII GATC 3 cut(s) 16, 402, 651
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 6 cut(s) 235, 271, 355, 659, 684, 695
EarI CTCTTC 6 cut(s) 235, 271, 355, 659, 684, 695
EciI GGCGGA 1 cut(s) 662
Eco147I AGGCCT 2 cut(s) 31, 193
Eco47I GGWCC 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 193, 481
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 2 cut(s) 74, 189
FaiI YATR 8 cut(s) 50, 72, 187, 251, 257, 329, 336, 725
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 70, 185
FauI CCCGC 3 cut(s) 152, 336, 687
FspBI CTAG 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 2 cut(s) 396, 423
HaeIII GGCC 3 cut(s) 31, 193, 390
HapII CCGG 1 cut(s) 122
Hin1II CATG 2 cut(s) 74, 189
HinfI GANTC 5 cut(s) 95, 116, 127, 434, 498
HpaII CCGG 1 cut(s) 122
HphI GGTGA 1 cut(s) 136
Hpy188III TCNNGA 4 cut(s) 131, 431, 453, 655
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 450
HpyF3I CTNAG 2 cut(s) 104, 570
Hsp92II CATG 2 cut(s) 74, 189
Kzo9I GATC 3 cut(s) 16, 402, 651
LguI GCTCTTC 2 cut(s) 659, 684
LmnI GCTCC 1 cut(s) 365
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 4 cut(s) 212, 259, 475, 543
MalI GATC 3 cut(s) 18, 404, 653
MbiI CCGCTC 1 cut(s) 694
MboI GATC 3 cut(s) 16, 402, 651
MboII GAAGA 9 cut(s) 252, 288, 369, 372, 587, 613, 676, 701, 712
MflI RGATCY 2 cut(s) 402, 651
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 3 cut(s) 175, 613, 636
MseI TTAA 1 cut(s) 716
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 195, 483
MvaI CCWGG 2 cut(s) 195, 483
MvnI CGCG 1 cut(s) 324
NdeII GATC 3 cut(s) 16, 402, 651
NlaIII CATG 2 cut(s) 74, 189
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 3 cut(s) 212, 259, 475
PceI AGGCCT 2 cut(s) 31, 193
PciSI GCTCTTC 2 cut(s) 659, 684
PfeI GAWTC 5 cut(s) 95, 116, 127, 434, 498
PflMI CCANNNNNTGG 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 193, 481
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 193, 481
PspPI GGNCC 1 cut(s) 485
PsuI RGATCY 2 cut(s) 402, 651
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SapI GCTCTTC 2 cut(s) 659, 684
SaqAI TTAA 1 cut(s) 716
Sau3AI GATC 3 cut(s) 16, 402, 651
Sau96I GGNCC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 195, 483
SduI GDGCHC 1 cut(s) 671
SetI ASST 8 cut(s) 211, 283, 319, 370, 571, 583, 609, 682
SinI GGWCC 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 3 cut(s) 175, 613, 636
SseBI AGGCCT 2 cut(s) 31, 193
SsiI CCGC 6 cut(s) 159, 264, 343, 647, 694, 709
SspMI CTAG 1 cut(s) 267
StuI AGGCCT 2 cut(s) 31, 193
StyD4I CCNGG 2 cut(s) 193, 481
TaaI ACNGT 1 cut(s) 450
TaqI TCGA 4 cut(s) 19, 44, 415, 470
TasI AATT 3 cut(s) 175, 613, 636
TfiI GAWTC 5 cut(s) 95, 116, 127, 434, 498
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 3 cut(s) 212, 259, 475
Tsp45I GTSAC 3 cut(s) 212, 259, 475
TspDTI ATGAA 1 cut(s) 577
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 485
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.