RLG00000024024

negative regulation of ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001662
Physical Location & Seq
Forward (+)
30952884 .. 30954704
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024024

Sequence Viewer

Length: 714 bp
ATGCCGGTGGAGTCTAGATTCAGGCTTGAAAGGCCGTTTGACATTGCGGAGGCCTTTTCTCAAAGGCGATCTGGCTCGCTTGCAGTTCTAATCGATCAGCGTGCGGAGTTGTTTGAGTCGCCGGCGAGGTGGAGGGCTTTAGCGACACCGGTGCATCAGAGACAGCTAGGGTTATGGGCCACAGGAGGTGATGGGCTCGCGCGGAGCAGAATGAGGACACCGAGAGCCGCGATTGGTCAAGAGAATGCGCTGCTGGCCGGAAGTTCTAACCGGAGAAGGGGAAGGGGATCAAACAGTGTGTTGCCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCGATTACCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCCGAGGGTCAAGTTCCATCTCTACAAGTTCAGGATGCTCCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTAGTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTGCTGAACTCAATTGACAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.63

Weight (kDa)

10.92

Isoelectric Point (pI)

62.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 200, 202, 230
AciI CCGC 4 cut(s) 47, 104, 202, 228
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 2 cut(s) 620, 665
AfiI CCNNNNNNNGG 3 cut(s) 277, 363, 560
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 29, 477
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 3 cut(s) 166, 374, 589
AluI AGCT 3 cut(s) 166, 374, 589
Alw21I GWGCWC 2 cut(s) 376, 525
Alw26I GTCTC 2 cut(s) 154, 484
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 655
AoxI GGCC 5 cut(s) 32, 51, 177, 255, 354
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 3 cut(s) 250, 464, 589
ApoI RAATTY 1 cut(s) 528
AsiGI ACCGGT 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 202, 250
AspS9I GGNCC 3 cut(s) 177, 354, 651
AsuHPI GGTGA 2 cut(s) 200, 395
AsuII TTCGAA 1 cut(s) 691
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 1 cut(s) 651
BaeGI GKGCMC 1 cut(s) 525
BanII GRGCYC 2 cut(s) 198, 376
Bbv12I GWGCWC 2 cut(s) 376, 525
BbvI GCAGC 3 cut(s) 237, 451, 576
BccI CCATC 2 cut(s) 185, 427
BceAI ACGGC 1 cut(s) 19
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 133, 167
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 154, 484
BfaI CTAG 4 cut(s) 15, 167, 504, 536
BfuI GTATCC 1 cut(s) 324
BisI GCNGC 4 cut(s) 228, 251, 465, 590
BlsI GCNGC 4 cut(s) 229, 252, 466, 591
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 651
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 177, 354, 651
BmiI GGNNCC 1 cut(s) 653
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 3 cut(s) 163, 427, 460
BplI GAGNNNNNCTC 2 cut(s) 358, 390
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 691
Bsa29I ATCGAT 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 351, 405
BsaWI WCCGGW 2 cut(s) 148, 270
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 363, 560
Bse118I RCCGGY 3 cut(s) 4, 121, 148
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 351, 405
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 277, 363, 560
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 438
BseRI GAGGAG 3 cut(s) 379, 401, 432
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 3 cut(s) 237, 451, 576
Bsh1236I CGCG 3 cut(s) 200, 202, 230
BshFI GGCC 5 cut(s) 34, 53, 179, 257, 356
BshTI ACCGGT 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 376, 525
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 5 cut(s) 5, 122, 149, 258, 271
BslI CCNNNNNNNGG 3 cut(s) 277, 363, 560
BsmAI GTCTC 2 cut(s) 154, 484
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 5 cut(s) 34, 53, 179, 257, 356
Bso31I GGTCTC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 655
Bsp119I TTCGAA 1 cut(s) 691
Bsp1286I GDGCHC 3 cut(s) 198, 376, 525
Bsp143I GATC 3 cut(s) 68, 94, 287
BspACI CCGC 4 cut(s) 47, 104, 202, 228
BspANI GGCC 5 cut(s) 34, 53, 179, 257, 356
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 3 cut(s) 200, 202, 230
BspLI GGNNCC 1 cut(s) 653
BspPI GGATC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 364
BspT104I TTCGAA 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 3 cut(s) 4, 121, 148
BssAI RCCGGY 3 cut(s) 4, 121, 148
BssECI CCNNGG 2 cut(s) 351, 405
BssMI GATC 3 cut(s) 68, 94, 287
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 3 cut(s) 364, 482, 641
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 7 cut(s) 77, 81, 102, 123, 198, 255, 376
BstDEI CTNAG 2 cut(s) 447, 663
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 3 cut(s) 200, 202, 230
BstHHI GCGC 2 cut(s) 202, 250
BstKTI GATC 3 cut(s) 71, 97, 290
BstMAI GTCTC 2 cut(s) 154, 484
BstMBI GATC 3 cut(s) 68, 94, 287
BstMWI GCNNNNNNNGC 3 cut(s) 31, 254, 668
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 3 cut(s) 200, 202, 230
BstV1I GCAGC 3 cut(s) 237, 451, 576
Bsu15I ATCGAT 1 cut(s) 93
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 5 cut(s) 34, 53, 179, 257, 356
BsuTUI ATCGAT 1 cut(s) 93
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 7 cut(s) 77, 81, 102, 123, 198, 255, 376
CaiI CAGNNNCTG 1 cut(s) 643
CfoI GCGC 2 cut(s) 202, 250
Cfr10I RCCGGY 3 cut(s) 4, 121, 148
Cfr13I GGNCC 3 cut(s) 177, 354, 651
ClaI ATCGAT 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 148
DdeI CTNAG 2 cut(s) 447, 663
DpnI GATC 3 cut(s) 70, 96, 289
DpnII GATC 3 cut(s) 68, 94, 287
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 3 cut(s) 364, 482, 641
EarI CTCTTC 3 cut(s) 364, 482, 641
Ecl136II GAGCTC 1 cut(s) 374
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 2 cut(s) 198, 376
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 620, 665
Eco88I CYCGRG 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 350
EcoT38I GRGCYC 2 cut(s) 198, 376
FaiI YATR 2 cut(s) 175, 338
Fnu4HI GCNGC 4 cut(s) 228, 251, 465, 590
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 2 cut(s) 198, 376
Fsp4HI GCNGC 4 cut(s) 228, 251, 465, 590
FspBI CTAG 4 cut(s) 15, 167, 504, 536
GlaI GCGC 2 cut(s) 201, 249
GluI GCNGC 4 cut(s) 228, 251, 465, 590
HaeIII GGCC 5 cut(s) 34, 53, 179, 257, 356
HapII CCGG 5 cut(s) 5, 122, 149, 258, 271
HhaI GCGC 2 cut(s) 202, 250
Hin6I GCGC 2 cut(s) 200, 248
HinP1I GCGC 2 cut(s) 200, 248
HinfI GANTC 3 cut(s) 11, 18, 116
HpaII CCGG 5 cut(s) 5, 122, 149, 258, 271
HphI GGTGA 2 cut(s) 200, 395
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 2 cut(s) 159, 639
Hpy188III TCNNGA 4 cut(s) 15, 239, 434, 446
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 6 cut(s) 270, 276, 315, 483, 610, 661
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 3 cut(s) 83, 154, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 254, 668
HpyF3I CTNAG 2 cut(s) 447, 663
HspAI GCGC 2 cut(s) 200, 248
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 3 cut(s) 68, 94, 287
LguI GCTCTTC 1 cut(s) 364
LmnI GCTCC 2 cut(s) 204, 445
Lsp1109I GCAGC 3 cut(s) 237, 451, 576
LweI GCATC 3 cut(s) 163, 427, 460
MaeI CTAG 4 cut(s) 15, 167, 504, 536
MaeIII GTNAC 1 cut(s) 571
MalI GATC 3 cut(s) 70, 96, 289
MboI GATC 3 cut(s) 68, 94, 287
MboII GAAGA 5 cut(s) 381, 499, 595, 641, 658
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 3 cut(s) 198, 376, 525
MluCI AATT 2 cut(s) 528, 600
MlyI GAGTC 2 cut(s) 20, 125
MmeI TCCRAC 1 cut(s) 606
MreI CGCCGGCG 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 2 cut(s) 483, 516
MspI CCGG 5 cut(s) 5, 122, 149, 258, 271
MspR9I CCNGG 1 cut(s) 352
MunI CAATTG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 352
MvnI CGCG 3 cut(s) 200, 202, 230
MwoI GCNNNNNNNGC 3 cut(s) 31, 254, 668
NaeI GCCGGC 1 cut(s) 123
NdeII GATC 3 cut(s) 68, 94, 287
NgoMIV GCCGGC 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 653
NmeAIII GCCGAG 1 cut(s) 430
NspV TTCGAA 1 cut(s) 691
PceI AGGCCT 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 364
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 18
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 4 cut(s) 229, 252, 466, 591
PleI GAGTC 2 cut(s) 19, 124
PpsI GAGTC 2 cut(s) 19, 124
PpuMI RGGWCCY 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 653
PspPI GGNCC 3 cut(s) 177, 354, 651
PspPPI RGGWCCY 1 cut(s) 651
PstNI CAGNNNCTG 1 cut(s) 643
SacI GAGCTC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 364
SaqAI TTAA 2 cut(s) 483, 516
SatI GCNGC 4 cut(s) 228, 251, 465, 590
Sau3AI GATC 3 cut(s) 68, 94, 287
Sau96I GGNCC 3 cut(s) 177, 354, 651
SchI GAGTC 2 cut(s) 20, 125
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 3 cut(s) 198, 376, 525
SfaNI GCATC 3 cut(s) 163, 427, 460
SfuI TTCGAA 1 cut(s) 691
SgrAI CRCCGGYG 2 cut(s) 121, 148
SinI GGWCC 1 cut(s) 651
Sse9I AATT 2 cut(s) 528, 600
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 4 cut(s) 47, 104, 202, 228
SspMI CTAG 4 cut(s) 15, 167, 504, 536
SstI GAGCTC 1 cut(s) 376
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 93, 691
TasI AATT 2 cut(s) 528, 600
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 483, 516
Tru9I TTAA 2 cut(s) 483, 516
TscAI CASTG 1 cut(s) 301
TseI GCWGC 3 cut(s) 250, 464, 589
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 301
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 1 cut(s) 528
XbaI TCTAGA 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 4 cut(s) 15, 167, 504, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.