Rh7DG321500

negative regulation of ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001662
Physical Location & Seq
Forward (+)
38395920 .. 38396557
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG321500.1

Sequence Viewer

Length: 399 bp
ATGAGTCTGGGGAGGAGGAGGTCGAGTATTAAATTTCTCAATTATAAAGAGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCAAAACTGCAGAGGGTCAATTTCCATCTCTACAAGTTCAGGATGCTTCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTAGTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTACTGAACTCAATTGACAAAGTTGAAAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.04

Weight (kDa)

10.21

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AcsI RAATTY 2 cut(s) 32, 213
AcuI CTGAAG 2 cut(s) 305, 350
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 162, 299
AluBI AGCT 2 cut(s) 59, 274
AluI AGCT 2 cut(s) 59, 274
Alw21I GWGCWC 2 cut(s) 61, 210
Alw26I GTCTC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 32, 213
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 61
Bbv12I GWGCWC 2 cut(s) 61, 210
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 189, 221
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 338
BmsI GCATC 2 cut(s) 112, 145
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 3 cut(s) 28, 31, 86
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 61, 210
BsiHKCI CYCGRG 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 61, 210
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 338
BspMAI CTGCAG 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 169
Bst6I CTCTTC 3 cut(s) 49, 167, 326
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 132, 348
BstF5I GGATG 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 336
CviJI RGCY 5 cut(s) 59, 230, 238, 274, 328
CviKI_1 RGCY 5 cut(s) 59, 230, 238, 274, 328
DdeI CTNAG 2 cut(s) 132, 348
Eam1104I CTCTTC 3 cut(s) 49, 167, 326
EarI CTCTTC 3 cut(s) 49, 167, 326
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 305, 350
Eco88I CYCGRG 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 61
FaiI YATR 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 189, 221
GluI GCNGC 1 cut(s) 150
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 2 cut(s) 119, 131
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 168, 346
HpyCH4V TGCA 2 cut(s) 89, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 132, 348
LguI GCTCTTC 1 cut(s) 49
LpnPI CCDG 3 cut(s) 104, 144, 252
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 112, 145
MaeI CTAG 2 cut(s) 189, 221
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 5 cut(s) 66, 184, 280, 326, 343
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 61, 210
MluCI AATT 5 cut(s) 32, 40, 98, 213, 285
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 3 cut(s) 30, 168, 201
MunI CAATTG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 338
NspV TTCGAA 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 318
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 336
PsiI TTATAA 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 1 cut(s) 336
PspPPI RGGWCCY 1 cut(s) 336
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 328
SacI GAGCTC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 3 cut(s) 30, 168, 201
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 61, 210
SetI ASST 8 cut(s) 23, 61, 181, 190, 228, 276, 306, 375
SfaNI GCATC 2 cut(s) 112, 145
SfcI CTRYAG 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 1 cut(s) 336
Sse9I AATT 5 cut(s) 32, 40, 98, 213, 285
SspMI CTAG 2 cut(s) 189, 221
SstI GAGCTC 1 cut(s) 61
TaqI TCGA 2 cut(s) 23, 376
TasI AATT 5 cut(s) 32, 40, 98, 213, 285
Tru1I TTAA 3 cut(s) 30, 168, 201
Tru9I TTAA 3 cut(s) 30, 168, 201
TseI GCWGC 1 cut(s) 149
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 2 cut(s) 32, 213
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 2 cut(s) 189, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.