Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039741.1

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

294 .. 680

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgccggtggagtctagattcaggcttgagaggccgtttgacatagcggaggccttttctcaaaggcgatctggctcgcttgcagttctaaacgatcagcgtgtggagtcgttggaatcgccggcgaggcggagggcgttagcgacaccggtgcatcagagacggctagggttatgggccgcaggaggtgatgggctcgcgcggagcagaacgaggacaccgagagccgcgattggtcaagagaatgtgctgctggccggaagttctagccggagaaggggaaggggatcaaacagtgtgttgccttcttggtatccaagaacccctatccgtgatataactgcgatttccagggtaaggatcactttctccgacttctgtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

11.81

Isoelectric Point (pI)

78.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	200, 202, 230
AciI	CCGC	5 cut(s)	47, 130, 180, 202, 228
AclWI	GGATC	2 cut(s)	295, 368
AcoI	YGGCCR	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	277, 357
AgeI	ACCGGT	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	295, 368
AoxI	GGCC	4 cut(s)	32, 51, 177, 255
ApeKI	GCWGC	1 cut(s)	250
AsiGI	ACCGGT	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	19, 179
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	3 cut(s)	15, 167, 267
BfuI	GTATCC	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	180, 228, 251
BlsI	GCNGC	3 cut(s)	181, 229, 252
Bme1390I	CCNGG	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 357
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	277, 357
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	3 cut(s)	200, 202, 230
BshFI	GGCC	4 cut(s)	34, 53, 179, 257
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	5 cut(s)	5, 122, 149, 258, 271
BslI	CCNNNNNNNGG	2 cut(s)	277, 357
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	34, 53, 179, 257
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	68, 94, 287, 360
BspACI	CCGC	5 cut(s)	47, 130, 180, 202, 228
BspANI	GGCC	4 cut(s)	34, 53, 179, 257
BspFNI	CGCG	3 cut(s)	200, 202, 230
BspPI	GGATC	2 cut(s)	295, 368
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	4 cut(s)	68, 94, 287, 360
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	77, 81, 123, 198, 255
BstFNI	CGCG	3 cut(s)	200, 202, 230
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	71, 97, 290, 363
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	4 cut(s)	68, 94, 287, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 127
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstUI	CGCG	3 cut(s)	200, 202, 230
BstV1I	GCAGC	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	4 cut(s)	34, 53, 179, 257
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	5 cut(s)	77, 81, 123, 198, 255
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	1 cut(s)	177
CspAI	ACCGGT	1 cut(s)	148
DpnI	GATC	4 cut(s)	70, 96, 289, 362
DpnII	GATC	4 cut(s)	68, 94, 287, 360
EaeI	YGGCCR	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	3 cut(s)	44, 175, 338
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
Fnu4HI	GCNGC	3 cut(s)	180, 228, 251
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	3 cut(s)	180, 228, 251
FspBI	CTAG	3 cut(s)	15, 167, 267
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	180, 228, 251
HaeIII	GGCC	4 cut(s)	34, 53, 179, 257
HapII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	4 cut(s)	11, 18, 107, 116
HpaII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	159, 373
Hpy188III	TCNNGA	2 cut(s)	15, 239
HpyAV	CCTTC	3 cut(s)	270, 276, 315
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	83, 154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 127
HspAI	GCGC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	68, 94, 287, 360
LmnI	GCTCC	1 cut(s)	204
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	3 cut(s)	15, 167, 267
MalI	GATC	4 cut(s)	70, 96, 289, 362
MboI	GATC	4 cut(s)	68, 94, 287, 360
MhlI	GDGCHC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	20, 116
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	24, 43, 120, 126, 179, 207
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MspI	CCGG	5 cut(s)	5, 122, 149, 258, 271
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	3 cut(s)	200, 202, 230
MwoI	GCNNNNNNNGC	2 cut(s)	31, 127
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	4 cut(s)	68, 94, 287, 360
NgoMIV	GCCGGC	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PdiI	GCCGGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	18, 116
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	181, 229, 252
PleI	GAGTC	2 cut(s)	19, 115
PpsI	GAGTC	2 cut(s)	19, 115
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	177
SatI	GCNGC	3 cut(s)	180, 228, 251
Sau3AI	GATC	4 cut(s)	68, 94, 287, 360
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	20, 116
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	163
SgrAI	CRCCGGYG	2 cut(s)	121, 148
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	5 cut(s)	47, 130, 180, 202, 228
SspMI	CTAG	3 cut(s)	15, 167, 267
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	296
TauI	GCSGC	2 cut(s)	182, 230
TfiI	GAWTC	2 cut(s)	18, 116
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	14
XspI	CTAG	3 cut(s)	15, 167, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.