Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Forward (+)

30727219 .. 30729681

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCGGTGGAGTCTAGATTCAGGCTTGAGAGGCCGTTTGACATCGCGGAGGCCTTTTCTCAAAGGCGATCTGGCTCGCTTGCGGTTCGAATCGATGAGCGTGGGGAGTTGTTTGGGTCGCCGGCGAGGCGGAGGGCGTTAGCGACACCGGTACACCAGAGACGGCTAGGGTTATGGGCTACAGGAGGTGATGGGCTCGCGAGCAGAATGAGGACACCGAGAGCCGCGATTGGTCAAGAGAATGCGCTGCTGGGCGGAAGTTCTAACCGGAGAAGGGGACGGGGATCGAACAGTGTGTTGCCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCGATTACCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCAGAGGGTCAAGTTCCATCTCTACAAGTTCAGGATGCTCCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTCCTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTGCTGAACTCGATTGACAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.43

Weight (kDa)

11.13

Isoelectric Point (pI)

64.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	47, 200, 227
AciI	CCGC	5 cut(s)	47, 83, 130, 225, 255
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	2 cut(s)	617, 662
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	274, 360, 557
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	474
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	2 cut(s)	371, 586
AluI	AGCT	2 cut(s)	371, 586
Alw21I	GWGCWC	2 cut(s)	373, 522
Alw26I	GTCTC	2 cut(s)	154, 481
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	652
AoxI	GGCC	3 cut(s)	32, 51, 351
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	3 cut(s)	247, 461, 586
ApoI	RAATTY	1 cut(s)	525
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	351, 648
AsuHPI	GGTGA	2 cut(s)	200, 392
AsuII	TTCGAA	2 cut(s)	88, 688
AvaI	CYCGRG	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	198, 373
Bbv12I	GWGCWC	2 cut(s)	373, 522
BbvI	GCAGC	3 cut(s)	234, 448, 573
BccI	CCATC	2 cut(s)	185, 424
BceAI	ACGGC	2 cut(s)	19, 179
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	154, 481
BfaI	CTAG	3 cut(s)	15, 167, 533
BfmI	CTRYAG	2 cut(s)	180, 399
BfuI	GTATCC	1 cut(s)	321
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	4 cut(s)	225, 248, 462, 587
BlsI	GCNGC	4 cut(s)	226, 249, 463, 588
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	652
BmgT120I	GGNCC	2 cut(s)	351, 648
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	424, 457
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	2 cut(s)	88, 688
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	2 cut(s)	148, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 360, 557
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseBI	CCWGG	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	3 cut(s)	274, 360, 557
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	3 cut(s)	376, 398, 429
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	3 cut(s)	234, 448, 573
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	3 cut(s)	47, 200, 227
BshFI	GGCC	3 cut(s)	34, 53, 353
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	373, 522
BsiHKCI	CYCGRG	1 cut(s)	652
BsiSI	CCGG	4 cut(s)	5, 122, 149, 268
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	274, 360, 557
BsmAI	GTCTC	2 cut(s)	154, 481
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	34, 53, 353
Bso31I	GGTCTC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	652
Bsp119I	TTCGAA	2 cut(s)	88, 688
Bsp1286I	GDGCHC	3 cut(s)	198, 373, 522
Bsp143I	GATC	2 cut(s)	68, 284
Bsp68I	TCGCGA	1 cut(s)	200
BspACI	CCGC	5 cut(s)	47, 83, 130, 225, 255
BspANI	GGCC	3 cut(s)	34, 53, 353
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	3 cut(s)	47, 200, 227
BspLI	GGNNCC	1 cut(s)	650
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	361
BspT104I	TTCGAA	2 cut(s)	88, 688
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	68, 284
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	3 cut(s)	361, 479, 638
BstBI	TTCGAA	2 cut(s)	88, 688
BstC8I	GCNNGC	6 cut(s)	77, 81, 123, 198, 202, 373
BstDEI	CTNAG	2 cut(s)	444, 660
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	3 cut(s)	47, 200, 227
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	71, 287
BstMAI	GTCTC	2 cut(s)	154, 481
BstMBI	GATC	2 cut(s)	68, 284
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 127, 665
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	180, 399
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	3 cut(s)	47, 200, 227
BstV1I	GCAGC	3 cut(s)	234, 448, 573
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	34, 53, 353
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	298
BtuMI	TCGCGA	1 cut(s)	200
Cac8I	GCNNGC	6 cut(s)	77, 81, 123, 198, 202, 373
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	2 cut(s)	351, 648
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	152
CspAI	ACCGGT	1 cut(s)	148
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	2 cut(s)	444, 660
DpnI	GATC	2 cut(s)	70, 286
DpnII	GATC	2 cut(s)	68, 284
Eam1104I	CTCTTC	3 cut(s)	361, 479, 638
EarI	CTCTTC	3 cut(s)	361, 479, 638
EciI	GGCGGA	2 cut(s)	145, 270
Ecl136II	GAGCTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	198, 373
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	617, 662
Eco88I	CYCGRG	1 cut(s)	652
EcoICRI	GAGCTC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	347
EcoT38I	GRGCYC	2 cut(s)	198, 373
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	2 cut(s)	175, 335
FaqI	GGGAC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	225, 248, 462, 587
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	2 cut(s)	198, 373
Fsp4HI	GCNGC	4 cut(s)	225, 248, 462, 587
FspBI	CTAG	3 cut(s)	15, 167, 533
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	4 cut(s)	225, 248, 462, 587
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	34, 53, 353
HapII	CCGG	4 cut(s)	5, 122, 149, 268
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	3 cut(s)	11, 18, 90
HpaII	CCGG	4 cut(s)	5, 122, 149, 268
HphI	GGTGA	2 cut(s)	200, 392
Hpy166II	GTNNAC	2 cut(s)	154, 520
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	5 cut(s)	15, 199, 236, 431, 443
Hpy8I	GTNNAC	2 cut(s)	154, 520
HpyAV	CCTTC	6 cut(s)	267, 312, 480, 513, 607, 658
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	401, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 127, 665
HpyF3I	CTNAG	2 cut(s)	444, 660
HspAI	GCGC	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	68, 284
LguI	GCTCTTC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	3 cut(s)	234, 448, 573
LweI	GCATC	2 cut(s)	424, 457
MaeI	CTAG	3 cut(s)	15, 167, 533
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	2 cut(s)	70, 286
MboI	GATC	2 cut(s)	68, 284
MboII	GAAGA	5 cut(s)	378, 496, 592, 638, 655
MhlI	GDGCHC	3 cut(s)	198, 373, 522
MluCI	AATT	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	603
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	2 cut(s)	480, 513
MspI	CCGG	4 cut(s)	5, 122, 149, 268
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	3 cut(s)	47, 200, 227
MwoI	GCNNNNNNNGC	3 cut(s)	31, 127, 665
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	68, 284
NgoMIV	GCCGGC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	650
NruI	TCGCGA	1 cut(s)	200
NspV	TTCGAA	2 cut(s)	88, 688
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	18, 90
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	226, 249, 463, 588
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	2 cut(s)	351, 648
PspPPI	RGGWCCY	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	640
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	480, 513
SatI	GCNGC	4 cut(s)	225, 248, 462, 587
Sau3AI	GATC	2 cut(s)	68, 284
Sau96I	GGNCC	2 cut(s)	351, 648
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	3 cut(s)	198, 373, 522
SetI	ASST	8 cut(s)	190, 373, 493, 502, 540, 588, 618, 687
SfaNI	GCATC	2 cut(s)	424, 457
SfcI	CTRYAG	2 cut(s)	180, 399
SfuI	TTCGAA	2 cut(s)	88, 688
SgrAI	CRCCGGYG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	525
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	5 cut(s)	47, 83, 130, 225, 255
SspMI	CTAG	3 cut(s)	15, 167, 533
SstI	GAGCTC	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	5 cut(s)	88, 93, 287, 596, 688
TasI	AATT	1 cut(s)	525
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	18, 90
Tru1I	TTAA	2 cut(s)	480, 513
Tru9I	TTAA	2 cut(s)	480, 513
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	3 cut(s)	247, 461, 586
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	1 cut(s)	525
XbaI	TCTAGA	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	3 cut(s)	15, 167, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.