Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

265084 .. 266900

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000059.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgccggtggagtctagattcaggcttgagaggccgtttgacatcgcggaggccttttctcaaaggcgatctggctcgcttgcggttctaatcgatcagcgcgtggagtcgttggaatcgccggcgaggcggagggcgttagtgacaccggtgcgtcagagacggctagggttatgggccgcaggaggtgatgggctcgcgcggagcagaatgaggacaccgagagccgcgattggtcaagagaatgtgatgctggccggaagttctagccggagaaggggacggggatcgaacagtgtgttaccttcttggtatccaagaacccctctccgtgatataactgcgattaccagggccattgagaggagaagagctcgcttgggtgaggagaatggcgaaactgcagagggtcaatttccatctctacaagttctggatgctccccctgagcatcaagttctcgctgctactccttcaaccaataagaagagaccttacccacctccttctgttcttaaagtgcacaaaattctgctagaggtggctaatcagcctgatgagggagagttcgttacaccacagaagaagctgctgaactcaattgacaaagttgagaaggtagtgttggaagaacttcagaggcagaagaggacgccgagtgctaagaaggcagagagggaaagaaaggttcgaactttgatgtcaatgcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.75

Weight (kDa)

11.22

Isoelectric Point (pI)

70.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	47, 102, 200, 202, 230
AciI	CCGC	6 cut(s)	47, 83, 130, 180, 202, 228
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	653
AfiI	CCNNNNNNNGG	3 cut(s)	277, 363, 560
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	477
AjnI	CCWGG	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	2 cut(s)	374, 589
AluI	AGCT	2 cut(s)	374, 589
Alw21I	GWGCWC	2 cut(s)	376, 525
Alw26I	GTCTC	2 cut(s)	154, 484
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	5 cut(s)	32, 51, 177, 255, 354
ApaLI	GTGCAC	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	464, 589
ApoI	RAATTY	1 cut(s)	528
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	102, 202
AspS9I	GGNCC	2 cut(s)	177, 354
AsuHPI	GGTGA	2 cut(s)	200, 395
AsuII	TTCGAA	1 cut(s)	691
BaeGI	GKGCMC	1 cut(s)	525
BanII	GRGCYC	2 cut(s)	198, 376
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
Bbv12I	GWGCWC	2 cut(s)	376, 525
BbvI	GCAGC	2 cut(s)	451, 576
BccI	CCATC	2 cut(s)	185, 427
BceAI	ACGGC	2 cut(s)	19, 179
BciT130I	CCWGG	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	154, 484
BfaI	CTAG	4 cut(s)	15, 167, 267, 536
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	4 cut(s)	180, 228, 465, 590
BlsI	GCNGC	4 cut(s)	181, 229, 466, 591
Bme1390I	CCNGG	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	177, 354
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	3 cut(s)	240, 427, 460
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu10I	CCTNAGC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	691
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 363, 560
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseBI	CCWGG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	277, 363, 560
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	2 cut(s)	379, 401
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	451, 576
Bsh1236I	CGCG	5 cut(s)	47, 102, 200, 202, 230
BshFI	GGCC	5 cut(s)	34, 53, 179, 257, 356
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	376, 525
BsiSI	CCGG	5 cut(s)	5, 122, 149, 258, 271
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	277, 363, 560
BsmAI	GTCTC	2 cut(s)	154, 484
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	5 cut(s)	34, 53, 179, 257, 356
Bso31I	GGTCTC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	691
Bsp1286I	GDGCHC	3 cut(s)	198, 376, 525
Bsp143I	GATC	3 cut(s)	68, 94, 287
BspACI	CCGC	6 cut(s)	47, 83, 130, 180, 202, 228
BspANI	GGCC	5 cut(s)	34, 53, 179, 257, 356
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	5 cut(s)	47, 102, 200, 202, 230
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	68, 94, 287
BssNI	GRCGYC	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	3 cut(s)	364, 482, 641
BstACI	GRCGYC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	691
BstC8I	GCNNGC	6 cut(s)	77, 81, 123, 198, 255, 376
BstDEI	CTNAG	2 cut(s)	447, 663
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	5 cut(s)	47, 102, 200, 202, 230
BstHHI	GCGC	2 cut(s)	102, 202
BstKTI	GATC	3 cut(s)	71, 97, 290
BstMAI	GTCTC	2 cut(s)	154, 484
BstMBI	GATC	3 cut(s)	68, 94, 287
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 127, 668
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	5 cut(s)	47, 102, 200, 202, 230
BstV1I	GCAGC	2 cut(s)	451, 576
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	34, 53, 179, 257, 356
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	6 cut(s)	77, 81, 123, 198, 255, 376
CfoI	GCGC	2 cut(s)	102, 202
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	2 cut(s)	177, 354
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	2 cut(s)	143, 661
CspAI	ACCGGT	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	447, 663
DpnI	GATC	3 cut(s)	70, 96, 289
DpnII	GATC	3 cut(s)	68, 94, 287
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	364, 482, 641
EarI	CTCTTC	3 cut(s)	364, 482, 641
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	374
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	198, 376
Eco31I	GGTCTC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	620
EcoICRI	GAGCTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	198, 376
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	2 cut(s)	175, 338
FaqI	GGGAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	180, 228, 465, 590
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	198, 376
Fsp4HI	GCNGC	4 cut(s)	180, 228, 465, 590
FspBI	CTAG	4 cut(s)	15, 167, 267, 536
GlaI	GCGC	2 cut(s)	101, 201
GluI	GCNGC	4 cut(s)	180, 228, 465, 590
HaeIII	GGCC	5 cut(s)	34, 53, 179, 257, 356
HapII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HgaI	GACGC	2 cut(s)	143, 661
HhaI	GCGC	2 cut(s)	102, 202
Hin1I	GRCGYC	1 cut(s)	653
Hin6I	GCGC	2 cut(s)	100, 200
HinP1I	GCGC	2 cut(s)	100, 200
HinfI	GANTC	4 cut(s)	11, 18, 107, 116
HpaII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HphI	GGTGA	2 cut(s)	200, 395
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	159, 639
Hpy188III	TCNNGA	3 cut(s)	15, 239, 434
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	6 cut(s)	270, 315, 483, 516, 610, 661
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	404, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 127, 668
HpyF3I	CTNAG	2 cut(s)	447, 663
Hsp92I	GRCGYC	1 cut(s)	653
HspAI	GCGC	2 cut(s)	100, 200
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	68, 94, 287
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	204, 445
Lsp1109I	GCAGC	2 cut(s)	451, 576
LweI	GCATC	3 cut(s)	240, 427, 460
MaeI	CTAG	4 cut(s)	15, 167, 267, 536
MaeIII	GTNAC	3 cut(s)	142, 300, 571
MalI	GATC	3 cut(s)	70, 96, 289
MboI	GATC	3 cut(s)	68, 94, 287
MboII	GAAGA	5 cut(s)	381, 499, 595, 641, 658
MfeI	CAATTG	1 cut(s)	600
MhlI	GDGCHC	3 cut(s)	198, 376, 525
MluCI	AATT	3 cut(s)	413, 528, 600
MlyI	GAGTC	2 cut(s)	20, 116
MmeI	TCCRAC	2 cut(s)	93, 606
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	1 cut(s)	516
MspI	CCGG	5 cut(s)	5, 122, 149, 258, 271
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	5 cut(s)	47, 102, 200, 202, 230
MwoI	GCNNNNNNNGC	3 cut(s)	31, 127, 668
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	68, 94, 287
NgoMIV	GCCGGC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	681
NmuCI	GTSAC	1 cut(s)	142
NspV	TTCGAA	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	18, 116
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	181, 229, 466, 591
PleI	GAGTC	2 cut(s)	19, 115
PpsI	GAGTC	2 cut(s)	19, 115
Psp124BI	GAGCTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	177, 354
PstI	CTGCAG	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	4 cut(s)	180, 228, 465, 590
Sau3AI	GATC	3 cut(s)	68, 94, 287
Sau96I	GGNCC	2 cut(s)	177, 354
SchI	GAGTC	2 cut(s)	20, 116
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	3 cut(s)	198, 376, 525
SetI	ASST	9 cut(s)	190, 307, 376, 496, 505, 543, 591, 621, 690
SfaNI	GCATC	3 cut(s)	240, 427, 460
SfcI	CTRYAG	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	691
SgrAI	CRCCGGYG	2 cut(s)	121, 148
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	413, 528, 600
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	6 cut(s)	47, 83, 130, 180, 202, 228
SspMI	CTAG	4 cut(s)	15, 167, 267, 536
SstI	GAGCTC	1 cut(s)	376
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	93, 290, 691
TasI	AATT	3 cut(s)	413, 528, 600
TauI	GCSGC	2 cut(s)	182, 230
TfiI	GAWTC	2 cut(s)	18, 116
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	464, 589
Tsp45I	GTSAC	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	301
VneI	GTGCAC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	4 cut(s)	15, 167, 267, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.