Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Forward (+)

37503146 .. 37503676

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATTTATTACCAGCCACTATGGATCTATAGCGTATGTTTAATAAGTGCCTTGCACTATGTACTTTCTATTCAGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCAGAGGATCAATTTCCATCTCTACAAGTTCAGGATGCTTCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTAGTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTACTGAACTCAATTGACAAAGTTGAGAAGGTTGTCAGGACCCACCCCGGAATTACCCCCCTAACTCCAAGATGGACCTGCGGGGCCCACTTTTCAATCCTCTGGGCAATGAATCTGAGTAAAGATCCTCTCCATTTTATTCAGCCAATTTTGAGCATCCGGGGCATGGAGCTTATAGCTTCTCCCATGCTCCGGATGCTATGGATGCTCAAAATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.96

Weight (kDa)

8.81

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	3 cut(s)	32, 138, 428
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	4 cut(s)	84, 281, 475, 501
AgsI	TTSAA	2 cut(s)	198, 405
AluBI	AGCT	4 cut(s)	95, 310, 481, 488
AluI	AGCT	4 cut(s)	95, 310, 481, 488
Alw21I	GWGCWC	2 cut(s)	97, 246
Alw26I	GTCTC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	3 cut(s)	32, 138, 428
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	2 cut(s)	75, 393
ApaI	GGGCCC	1 cut(s)	397
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	4 cut(s)	348, 384, 393, 394
AsuC2I	CCSGG	2 cut(s)	357, 470
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	348, 384
BaeGI	GKGCMC	2 cut(s)	246, 397
BanII	GRGCYC	2 cut(s)	97, 397
Bbv12I	GWGCWC	2 cut(s)	97, 246
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	148, 375
BcnI	CCSGG	2 cut(s)	357, 470
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	225, 257
BfmI	CTRYAG	2 cut(s)	28, 123
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	357, 470
Bme18I	GGWCC	2 cut(s)	348, 384
BmgT120I	GGNCC	4 cut(s)	348, 384, 393, 394
BmiI	GGNNCC	3 cut(s)	350, 394, 395
BmrFI	CCNGG	2 cut(s)	357, 470
BmsI	GCATC	5 cut(s)	148, 181, 474, 495, 504
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
Bpu10I	CCTNAGC	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	357, 470
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	355, 469
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 281, 475, 501
Bse3DI	GCAATG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	355, 469
BseGI	GGATG	4 cut(s)	163, 465, 510, 519
BseLI	CCNNNNNNNGG	4 cut(s)	84, 281, 475, 501
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	159, 416
BseRI	GAGGAG	2 cut(s)	100, 122
BseSI	GKGCMC	2 cut(s)	246, 397
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	77, 395
BsiHKAI	GWGCWC	2 cut(s)	97, 246
BsiSI	CCGG	3 cut(s)	357, 469, 502
BslI	CCNNNNNNNGG	4 cut(s)	84, 281, 475, 501
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	77, 395
Bso31I	GGTCTC	1 cut(s)	205
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	3 cut(s)	97, 246, 397
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	3 cut(s)	24, 130, 433
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	2 cut(s)	77, 395
BspCNI	CTCAG	2 cut(s)	160, 417
BspEI	TCCGGA	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	350, 394, 395
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	32, 138, 428
BspQI	GCTCTTC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	355, 469
BssMI	GATC	3 cut(s)	24, 130, 433
Bst6I	CTCTTC	2 cut(s)	85, 203
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	168, 425
BstF5I	GGATG	4 cut(s)	163, 465, 510, 519
BstKTI	GATC	3 cut(s)	27, 133, 436
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	24, 130, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	471, 505, 514
BstSCI	CCNGG	2 cut(s)	355, 468
BstSFI	CTRYAG	2 cut(s)	28, 123
BstSLI	GKGCMC	2 cut(s)	246, 397
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	2 cut(s)	24, 433
BstYI	RGATCY	2 cut(s)	24, 433
BsuRI	GGCC	2 cut(s)	77, 395
BtsCI	GGATG	4 cut(s)	163, 465, 510, 519
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	4 cut(s)	348, 384, 393, 394
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	475, 496
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	2 cut(s)	168, 425
DpnI	GATC	3 cut(s)	26, 132, 435
DpnII	GATC	3 cut(s)	24, 130, 433
Eam1104I	CTCTTC	2 cut(s)	85, 203
EarI	CTCTTC	2 cut(s)	85, 203
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	97, 397
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	348, 384
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	348, 393
EcoT38I	GRGCYC	2 cut(s)	97, 397
FaeI	CATG	2 cut(s)	478, 499
FaiI	YATR	8 cut(s)	22, 30, 37, 60, 476, 485, 497, 511
FatI	CATG	2 cut(s)	474, 495
FauI	CCCGC	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	4 cut(s)	170, 452, 517, 526
FriOI	GRGCYC	2 cut(s)	97, 397
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	225, 257
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	77, 395
HapII	CCGG	3 cut(s)	357, 469, 502
Hin1II	CATG	2 cut(s)	478, 499
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	3 cut(s)	357, 469, 502
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	4 cut(s)	155, 167, 346, 502
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	204, 331
HpyCH4V	TGCA	3 cut(s)	55, 125, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	471, 505, 514
HpyF3I	CTNAG	2 cut(s)	168, 425
Hsp92II	CATG	2 cut(s)	478, 499
Kpn2I	TCCGGA	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	24, 130, 433
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	478, 504
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	5 cut(s)	148, 181, 474, 495, 504
MaeI	CTAG	2 cut(s)	225, 257
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	3 cut(s)	26, 132, 435
MboI	GATC	3 cut(s)	24, 130, 433
MboII	GAAGA	3 cut(s)	102, 220, 316
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	2 cut(s)	24, 433
MhlI	GDGCHC	3 cut(s)	97, 246, 397
MluCI	AATT	6 cut(s)	134, 249, 321, 360, 456, 522
MnlI	CCTC	7 cut(s)	78, 100, 121, 253, 274, 419, 447
MroI	TCCGGA	1 cut(s)	501
MseI	TTAA	3 cut(s)	41, 204, 237
MspI	CCGG	3 cut(s)	357, 469, 502
MspR9I	CCNGG	2 cut(s)	357, 470
MunI	CAATTG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	471, 505, 514
NciI	CCSGG	2 cut(s)	357, 470
NdeII	GATC	3 cut(s)	24, 130, 433
NlaIII	CATG	2 cut(s)	478, 499
NlaIV	GGNNCC	3 cut(s)	350, 394, 395
PciSI	GCTCTTC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	350, 394, 395
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	4 cut(s)	348, 384, 393, 394
PspPPI	RGGWCCY	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	24, 433
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	41, 204, 237
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	24, 130, 433
Sau96I	GGNCC	4 cut(s)	348, 384, 393, 394
ScrFI	CCNGG	2 cut(s)	357, 470
SduI	GDGCHC	3 cut(s)	97, 246, 397
SetI	ASST	9 cut(s)	97, 217, 226, 264, 312, 342, 389, 483, 490
SfaNI	GCATC	5 cut(s)	148, 181, 474, 495, 504
SfcI	CTRYAG	2 cut(s)	28, 123
SinI	GGWCC	2 cut(s)	348, 384
Sse9I	AATT	6 cut(s)	134, 249, 321, 360, 456, 522
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	225, 257
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	355, 468
TasI	AATT	6 cut(s)	134, 249, 321, 360, 456, 522
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	3 cut(s)	41, 204, 237
Tru9I	TTAA	3 cut(s)	41, 204, 237
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	348, 384
XapI	RAATTY	1 cut(s)	249
XspI	CTAG	2 cut(s)	225, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.