Rroxscaffold_3G00240460

negative regulation of ubiquitin-protein transferase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
32168757 .. 32171554
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240460.1

Sequence Viewer

Length: 849 bp
ATGATCGGACCGGCATTCGGCAAGCCTCACCTGCTTGAATCAAGATGCCGGTGGAGTCTAGATTCAGGCTTGAGAGGCCGTTTGACGTTGTGGAGGCCTTTTTCTCAAAGGCGATCTGGCTCGCTTGCTGTTCTAATCGATCACCACGTGGAGTCGTTGGAATCGCCGGCGAGGCGGAGGGCGTTAGCGACACCGGTGCATCAGAGACGGCTAGGGTTATGGGCCGCAGGAGGTGATGGGCTTGCAAGGAGCAGAATGAGGACACCGAGAGCCGCGATTGGTCGAAAGGATGTGGTGCTGGCCGGAAGTTCTAGCCGGAGAAGGGGACGGGGATCGAACAGTATGTTGCCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCGATTACCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCAGAGGGTCAATGTCCATCTCTACAAGTTCAGGATGCTTCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCGTTAAGAAGAGACCTTGCCCACCTAGTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTACTGAACTCAATTGACAAAGTTGAGAAGGTGGTGGGCAAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTACTGAACTCAATTGATAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.52

Weight (kDa)

10.87

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 39
Acc36I ACCTGC 1 cut(s) 39
AccII CGCG 1 cut(s) 275
AciI CCGC 3 cut(s) 175, 225, 273
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 573
AcuI CTGAAG 2 cut(s) 755, 800
AcvI CACGTG 1 cut(s) 148
AdeI CACNNNGTG 1 cut(s) 148
AfiI CCNNNNNNNGG 5 cut(s) 17, 322, 408, 605, 695
AgeI ACCGGT 1 cut(s) 193
AgsI TTSAA 2 cut(s) 38, 522
AjnI CCWGG 1 cut(s) 395
AjuI GAANNNNNNNTTGG 2 cut(s) 743, 775
AluBI AGCT 3 cut(s) 419, 634, 724
AluI AGCT 3 cut(s) 419, 634, 724
Alw21I GWGCWC 2 cut(s) 421, 570
Alw26I GTCTC 2 cut(s) 199, 529
Alw44I GTGCAC 1 cut(s) 566
AlwI GGATC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 778
Ama87I CYCGRG 1 cut(s) 790
AoxI GGCC 5 cut(s) 76, 95, 222, 300, 399
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 1 cut(s) 573
AsiGI ACCGGT 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 768
AspS9I GGNCC 4 cut(s) 8, 222, 399, 786
AsuHPI GGTGA 4 cut(s) 20, 134, 245, 440
AsuII TTCGAA 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 790
AvaII GGWCC 2 cut(s) 8, 786
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 421
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbrPI CACGTG 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 421, 570
BbvI GCAGC 1 cut(s) 496
BccI CCATC 2 cut(s) 230, 472
BceAI ACGGC 2 cut(s) 63, 224
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 397
BciVI GTATCC 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 199, 529
BfaI CTAG 5 cut(s) 59, 212, 312, 549, 581
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 39
BfuI GTATCC 1 cut(s) 369
BglI GCCNNNNNGGC 1 cut(s) 172
BisI GCNGC 3 cut(s) 225, 273, 510
BlsI GCNGC 3 cut(s) 226, 274, 511
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 2 cut(s) 8, 786
BmeT110I CYCGRG 1 cut(s) 790
BmgT120I GGNCC 4 cut(s) 8, 222, 399, 786
BmiI GGNNCC 1 cut(s) 788
BmrFI CCNGG 1 cut(s) 397
BmsI GCATC 4 cut(s) 35, 208, 472, 505
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 1 cut(s) 826
BpuEI CTTGAG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 4 cut(s) 600, 630, 690, 720
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 322, 408, 605, 695
Bse118I RCCGGY 4 cut(s) 10, 48, 166, 193
BseBI CCWGG 1 cut(s) 397
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 295, 487
BseLI CCNNNNNNNGG 5 cut(s) 17, 322, 408, 605, 695
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 2 cut(s) 424, 446
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 5 cut(s) 78, 97, 224, 302, 401
BshTI ACCGGT 1 cut(s) 193
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 421, 570
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 6 cut(s) 11, 49, 167, 194, 303, 316
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 5 cut(s) 17, 322, 408, 605, 695
BsmAI GTCTC 2 cut(s) 199, 529
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 5 cut(s) 78, 97, 224, 302, 401
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 790
Bsp119I TTCGAA 1 cut(s) 826
Bsp1286I GDGCHC 2 cut(s) 421, 570
Bsp143I GATC 4 cut(s) 3, 113, 139, 332
BspACI CCGC 3 cut(s) 175, 225, 273
BspANI GGCC 5 cut(s) 78, 97, 224, 302, 401
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 788
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 340
BspQI GCTCTTC 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 826
BspTNI GGTCTC 1 cut(s) 529
BsrFI RCCGGY 4 cut(s) 10, 48, 166, 193
BssAI RCCGGY 4 cut(s) 10, 48, 166, 193
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 4 cut(s) 3, 113, 139, 332
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 341, 526
Bst6I CTCTTC 3 cut(s) 409, 527, 776
BstBAI YACGTR 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 826
BstC8I GCNNGC 7 cut(s) 23, 122, 126, 168, 243, 300, 421
BstDEI CTNAG 2 cut(s) 492, 798
BstF5I GGATG 2 cut(s) 295, 487
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 4 cut(s) 6, 116, 142, 335
BstMAI GTCTC 2 cut(s) 199, 529
BstMBI GATC 4 cut(s) 3, 113, 139, 332
BstMWI GCNNNNNNNGC 4 cut(s) 31, 75, 172, 803
BstNI CCWGG 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 395
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 5 cut(s) 78, 97, 224, 302, 401
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 2 cut(s) 295, 487
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 7 cut(s) 23, 122, 126, 168, 243, 300, 421
CaiI CAGNNNCTG 1 cut(s) 778
Cfr10I RCCGGY 4 cut(s) 10, 48, 166, 193
Cfr13I GGNCC 4 cut(s) 8, 222, 399, 786
ClaI ATCGAT 1 cut(s) 138
CpoI CGGWCCG 1 cut(s) 8
CspAI ACCGGT 1 cut(s) 193
CspI CGGWCCG 1 cut(s) 8
DdeI CTNAG 2 cut(s) 492, 798
DpnI GATC 4 cut(s) 5, 115, 141, 334
DpnII GATC 4 cut(s) 3, 113, 139, 332
DraIII CACNNNGTG 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 3 cut(s) 409, 527, 776
EarI CTCTTC 3 cut(s) 409, 527, 776
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 419
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 8, 786
Eco53kI GAGCTC 1 cut(s) 419
Eco57I CTGAAG 2 cut(s) 755, 800
Eco72I CACGTG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 786
EcoRII CCWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 199
FaiI YATR 3 cut(s) 220, 344, 383
FaqI GGGAC 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 225, 273, 510
FokI GGATG 2 cut(s) 302, 494
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 3 cut(s) 225, 273, 510
FspBI CTAG 5 cut(s) 59, 212, 312, 549, 581
GluI GCNGC 3 cut(s) 225, 273, 510
HaeIII GGCC 5 cut(s) 78, 97, 224, 302, 401
HapII CCGG 6 cut(s) 11, 49, 167, 194, 303, 316
HinfI GANTC 5 cut(s) 38, 55, 62, 152, 161
HpaII CCGG 6 cut(s) 11, 49, 167, 194, 303, 316
HphI GGTGA 4 cut(s) 20, 134, 245, 440
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 3 cut(s) 8, 204, 774
Hpy188III TCNNGA 4 cut(s) 42, 59, 479, 491
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 6 cut(s) 315, 360, 528, 655, 745, 796
HpyCH4III ACNGT 2 cut(s) 341, 526
HpyCH4IV ACGT 2 cut(s) 86, 147
HpyCH4V TGCA 4 cut(s) 199, 245, 449, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 75, 172, 803
HpyF3I CTNAG 2 cut(s) 492, 798
HpySE526I ACGT 2 cut(s) 86, 147
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 4 cut(s) 3, 113, 139, 332
LguI GCTCTTC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 4 cut(s) 35, 208, 472, 505
MaeI CTAG 5 cut(s) 59, 212, 312, 549, 581
MaeII ACGT 2 cut(s) 86, 147
MaeIII GTNAC 2 cut(s) 616, 706
MalI GATC 4 cut(s) 5, 115, 141, 334
MboI GATC 4 cut(s) 3, 113, 139, 332
MboII GAAGA 6 cut(s) 426, 544, 640, 730, 776, 793
MfeI CAATTG 2 cut(s) 645, 735
MhlI GDGCHC 2 cut(s) 421, 570
MluCI AATT 3 cut(s) 573, 645, 735
MlyI GAGTC 2 cut(s) 64, 161
MmeI TCCRAC 2 cut(s) 138, 741
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 166
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 2 cut(s) 528, 561
MspI CCGG 6 cut(s) 11, 49, 167, 194, 303, 316
MspR9I CCNGG 1 cut(s) 397
MunI CAATTG 2 cut(s) 645, 735
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 397
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 31, 75, 172, 803
NaeI GCCGGC 1 cut(s) 168
NdeII GATC 4 cut(s) 3, 113, 139, 332
NgoMIV GCCGGC 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 788
NspV TTCGAA 1 cut(s) 826
PaqCI CACCTGC 1 cut(s) 39
PceI AGGCCT 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 3 cut(s) 38, 62, 161
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 3 cut(s) 226, 274, 511
PleI GAGTC 2 cut(s) 63, 160
PmaCI CACGTG 1 cut(s) 148
PmlI CACGTG 1 cut(s) 148
PpsI GAGTC 2 cut(s) 63, 160
Ppu21I YACGTR 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 395
PspCI CACGTG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 788
PspPI GGNCC 4 cut(s) 8, 222, 399, 786
PspPPI RGGWCCY 1 cut(s) 786
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 778
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SacI GAGCTC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 528, 561
SatI GCNGC 3 cut(s) 225, 273, 510
Sau3AI GATC 4 cut(s) 3, 113, 139, 332
Sau96I GGNCC 4 cut(s) 8, 222, 399, 786
SchI GAGTC 2 cut(s) 64, 161
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 2 cut(s) 421, 570
SfaNI GCATC 4 cut(s) 35, 208, 472, 505
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 826
SgrAI CRCCGGYG 2 cut(s) 166, 193
SinI GGWCC 2 cut(s) 8, 786
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 3 cut(s) 573, 645, 735
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 3 cut(s) 175, 225, 273
SspMI CTAG 5 cut(s) 59, 212, 312, 549, 581
SstI GAGCTC 1 cut(s) 421
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 341, 526
TaiI ACGT 2 cut(s) 89, 150
TaqI TCGA 4 cut(s) 138, 283, 335, 826
TasI AATT 3 cut(s) 573, 645, 735
TauI GCSGC 2 cut(s) 227, 275
TfiI GAWTC 3 cut(s) 38, 62, 161
Tru1I TTAA 2 cut(s) 528, 561
Tru9I TTAA 2 cut(s) 528, 561
TseI GCWGC 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 365
VneI GTGCAC 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 8, 786
XapI RAATTY 1 cut(s) 573
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 5 cut(s) 59, 212, 312, 549, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.