Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00301

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

31288 .. 33111

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCGGTGGAGTCTAGATTCAGGCTTGAGAGGCCGTTTGACATCGCGGAGGCCTTTTCTCAAAGGCGATCTGGCTCGCTTGCAGTTCTAAACGATCCGCGTGTGGAGTCGTTGGAATCGCCGGCGAGGCGGAGGGCGTTAGCGACACCGGTGCATCAGAGACGGCTAGGGTTATGGGCCAGGGCTACAGGAGGTGATGAGCTCGCGCAGAGCAGAATGAGGACACCGAGAGCCGCGATTGGTCAAGAGAATGTGCTGCTGGCCGGAAGTTCTAGCCGGAGAAGGGGACGGGGATCAAACAGTGTGTTGCCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCGATTTCCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCAGAGGGTCAAGTTTCATCTCTACAAGTTCAGGATGCTCCTCCTGAGCATCAAGTTCTCGCTGCTACTCCTTCAACCATTAAGAAGAGACCTTGCCCACCTCCTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTCGTTACACCACAGAAGAAGCTGCTGAACTCAATTGACAAAGTTGAGAAGGTGGTCATGGAAGAACTTCAGAGGCTGAAGAGGACCCCGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.84

Weight (kDa)

11.02

Isoelectric Point (pI)

68.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	47, 100, 206, 236
AciI	CCGC	4 cut(s)	47, 98, 130, 234
AclWI	GGATC	2 cut(s)	89, 301
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	2 cut(s)	626, 671
AfiI	CCNNNNNNNGG	3 cut(s)	283, 369, 566
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	483
AjnI	CCWGG	2 cut(s)	179, 356
AluBI	AGCT	3 cut(s)	202, 380, 595
AluI	AGCT	3 cut(s)	202, 380, 595
Alw21I	GWGCWC	3 cut(s)	204, 382, 531
Alw26I	GTCTC	2 cut(s)	154, 490
Alw44I	GTGCAC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	89, 301
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	5 cut(s)	32, 51, 177, 261, 360
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	3 cut(s)	256, 470, 595
ApoI	RAATTY	1 cut(s)	534
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	177, 360, 657
AsuHPI	GGTGA	2 cut(s)	206, 401
AsuII	TTCGAA	1 cut(s)	697
AvaI	CYCGRG	1 cut(s)	661
AvaII	GGWCC	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	204, 382
Bbv12I	GWGCWC	3 cut(s)	204, 382, 531
BbvI	GCAGC	3 cut(s)	243, 457, 582
BceAI	ACGGC	2 cut(s)	19, 179
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	181, 358
BciVI	GTATCC	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	154, 490
BfaI	CTAG	4 cut(s)	15, 167, 273, 542
BfmI	CTRYAG	2 cut(s)	186, 408
BfuI	GTATCC	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	4 cut(s)	234, 257, 471, 596
BlsI	GCNGC	4 cut(s)	235, 258, 472, 597
Bme1390I	CCNGG	2 cut(s)	181, 358
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	3 cut(s)	177, 360, 657
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	2 cut(s)	181, 358
BmsI	GCATC	3 cut(s)	163, 433, 466
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	697
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	180, 357
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 369, 566
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseBI	CCWGG	2 cut(s)	181, 358
BseDI	CCNNGG	2 cut(s)	180, 357
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	283, 369, 566
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	3 cut(s)	385, 407, 438
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	243, 457, 582
Bsh1236I	CGCG	4 cut(s)	47, 100, 206, 236
BshFI	GGCC	5 cut(s)	34, 53, 179, 263, 362
BshTI	ACCGGT	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	204, 382, 531
BsiHKCI	CYCGRG	1 cut(s)	661
BsiSI	CCGG	5 cut(s)	5, 122, 149, 264, 277
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	3 cut(s)	283, 369, 566
BsmAI	GTCTC	2 cut(s)	154, 490
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	5 cut(s)	34, 53, 179, 263, 362
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	661
Bsp119I	TTCGAA	1 cut(s)	697
Bsp1286I	GDGCHC	3 cut(s)	204, 382, 531
Bsp143I	GATC	3 cut(s)	68, 94, 293
BspACI	CCGC	4 cut(s)	47, 98, 130, 234
BspANI	GGCC	5 cut(s)	34, 53, 179, 263, 362
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	4 cut(s)	47, 100, 206, 236
BspLI	GGNNCC	1 cut(s)	659
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	89, 301
BspQI	GCTCTTC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	490
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssECI	CCNNGG	2 cut(s)	180, 357
BssMI	GATC	3 cut(s)	68, 94, 293
Bst2UI	CCWGG	2 cut(s)	181, 358
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	3 cut(s)	370, 488, 647
BstBI	TTCGAA	1 cut(s)	697
BstC8I	GCNNGC	6 cut(s)	77, 81, 123, 204, 261, 382
BstDEI	CTNAG	2 cut(s)	453, 669
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	4 cut(s)	47, 100, 206, 236
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	71, 97, 296
BstMAI	GTCTC	2 cut(s)	154, 490
BstMBI	GATC	3 cut(s)	68, 94, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 127, 674
BstNI	CCWGG	2 cut(s)	181, 358
BstSCI	CCNGG	2 cut(s)	179, 356
BstSFI	CTRYAG	2 cut(s)	186, 408
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	4 cut(s)	47, 100, 206, 236
BstV1I	GCAGC	3 cut(s)	243, 457, 582
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	5 cut(s)	34, 53, 179, 263, 362
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	6 cut(s)	77, 81, 123, 204, 261, 382
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	3 cut(s)	177, 360, 657
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	1 cut(s)	631
DdeI	CTNAG	2 cut(s)	453, 669
DpnI	GATC	3 cut(s)	70, 96, 295
DpnII	GATC	3 cut(s)	68, 94, 293
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	370, 488, 647
EarI	CTCTTC	3 cut(s)	370, 488, 647
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	2 cut(s)	202, 380
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	204, 382
Eco31I	GGTCTC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	657
Eco53kI	GAGCTC	2 cut(s)	202, 380
Eco57I	CTGAAG	2 cut(s)	626, 671
Eco88I	CYCGRG	1 cut(s)	661
EcoICRI	GAGCTC	2 cut(s)	202, 380
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	179, 356
EcoT38I	GRGCYC	2 cut(s)	204, 382
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	634
FaiI	YATR	3 cut(s)	175, 344, 632
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	234, 257, 471, 596
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	204, 382
Fsp4HI	GCNGC	4 cut(s)	234, 257, 471, 596
FspBI	CTAG	4 cut(s)	15, 167, 273, 542
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	234, 257, 471, 596
HaeIII	GGCC	5 cut(s)	34, 53, 179, 263, 362
HapII	CCGG	5 cut(s)	5, 122, 149, 264, 277
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	634
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	4 cut(s)	11, 18, 107, 116
HpaII	CCGG	5 cut(s)	5, 122, 149, 264, 277
HphI	GGTGA	2 cut(s)	206, 401
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	2 cut(s)	159, 645
Hpy188III	TCNNGA	4 cut(s)	15, 245, 440, 452
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	6 cut(s)	276, 321, 489, 522, 616, 667
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	83, 154, 410, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 127, 674
HpyF3I	CTNAG	2 cut(s)	453, 669
Hsp92II	CATG	1 cut(s)	634
HspAI	GCGC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	68, 94, 293
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	3 cut(s)	243, 457, 582
LweI	GCATC	3 cut(s)	163, 433, 466
MaeI	CTAG	4 cut(s)	15, 167, 273, 542
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	3 cut(s)	70, 96, 295
MboI	GATC	3 cut(s)	68, 94, 293
MboII	GAAGA	5 cut(s)	387, 505, 601, 647, 664
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	3 cut(s)	204, 382, 531
MluCI	AATT	2 cut(s)	534, 606
MlyI	GAGTC	2 cut(s)	20, 116
MmeI	TCCRAC	1 cut(s)	93
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	2 cut(s)	489, 522
MspI	CCGG	5 cut(s)	5, 122, 149, 264, 277
MspR9I	CCNGG	2 cut(s)	181, 358
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	2 cut(s)	181, 358
MvnI	CGCG	4 cut(s)	47, 100, 206, 236
MwoI	GCNNNNNNNGC	3 cut(s)	31, 127, 674
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	68, 94, 293
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	634
NlaIV	GGNNCC	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	697
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	18, 116
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	235, 258, 472, 597
PleI	GAGTC	2 cut(s)	19, 115
PpsI	GAGTC	2 cut(s)	19, 115
PpuMI	RGGWCCY	1 cut(s)	657
Psp124BI	GAGCTC	2 cut(s)	204, 382
Psp5II	RGGWCCY	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	179, 356
PspGI	CCWGG	2 cut(s)	179, 356
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	3 cut(s)	177, 360, 657
PspPPI	RGGWCCY	1 cut(s)	657
PstI	CTGCAG	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	649
SacI	GAGCTC	2 cut(s)	204, 382
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	489, 522
SatI	GCNGC	4 cut(s)	234, 257, 471, 596
Sau3AI	GATC	3 cut(s)	68, 94, 293
Sau96I	GGNCC	3 cut(s)	177, 360, 657
SchI	GAGTC	2 cut(s)	20, 116
ScrFI	CCNGG	2 cut(s)	181, 358
SduI	GDGCHC	3 cut(s)	204, 382, 531
SetI	ASST	9 cut(s)	196, 204, 382, 502, 511, 549, 597, 627, 696
SfaNI	GCATC	3 cut(s)	163, 433, 466
SfcI	CTRYAG	2 cut(s)	186, 408
SfuI	TTCGAA	1 cut(s)	697
SgrAI	CRCCGGYG	2 cut(s)	121, 148
SinI	GGWCC	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	534, 606
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	4 cut(s)	47, 98, 130, 234
SspMI	CTAG	4 cut(s)	15, 167, 273, 542
SstI	GAGCTC	2 cut(s)	204, 382
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	179, 356
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	697
TasI	AATT	2 cut(s)	534, 606
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	18, 116
Tru1I	TTAA	2 cut(s)	489, 522
Tru9I	TTAA	2 cut(s)	489, 522
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	3 cut(s)	256, 470, 595
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	4 cut(s)	15, 167, 273, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.