Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Forward (+)

16732906 .. 16735541

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCGGCGGAGTCGCGATTCAGGTTGGTGAGGCCGTTCGACATCGCCGAGGCCTTTGCTCAGAGGCCAACCGGCGGTGTCGGAATTCTTATCGAAGAGCGTCCGGAGCCGACGAGGCTAAGGGCGGCGGCGGTGGCAACTCCGGTGACTCAGAGGCCGCTAGGGATTTGGGCGAGGACGGGTGGTGGAGTGGCACCGAGCAGTTTGAGGACTCCGGGAACCGGACGAGGTGCGTTTGGGATGATGACTCCCGGAAGAGAGAATACGCCACCGGTCGGAGGGTCTAGCAGGAGAAGGGGACAGAGATCGAACAGTGTGTTACCTTCTTGGTACCCTAGAACCCCTCTCCGTGATATAACTGCAATTACTAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGATGAGGAGAATGGCAAAACTGTAGAGGGTCAAGTTCCATCTCTACAATTTCAGGATGCTCCTCCTGAGCATCAAGTTCTTTCTGTCACTCCTTCAACCATTAAGAAGAGACCTTGCGCACCTCCTTCAGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCCAATCAGCCTGATGAGGGAGAGTTTGTTACACCACAGAAGAAGCTGCTGAACTCGATTGATAAAGTTGAGAAGGTGGTGATGGAAGAACTTCAGAGGCTGAAGAGGACCCCAAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGGACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.93

Weight (kDa)

11.06

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	718
Acc16I	TGCGCA	1 cut(s)	517
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	193, 330
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	6 cut(s)	8, 75, 125, 128, 131, 158
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	84, 546
AcuI	CTGAAG	3 cut(s)	510, 638, 683
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	6 cut(s)	74, 221, 275, 278, 381, 578
AgeI	ACCGGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	495
AluBI	AGCT	2 cut(s)	392, 607
AluI	AGCT	2 cut(s)	392, 607
Alw21I	GWGCWC	2 cut(s)	394, 543
Alw26I	GTCTC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	661
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	6 cut(s)	32, 51, 65, 155, 372, 561
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	2 cut(s)	84, 546
AsiGI	ACCGGT	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	372, 669
AsuC2I	CCSGG	2 cut(s)	216, 252
AsuHPI	GGTGA	3 cut(s)	40, 157, 652
AvaII	GGWCC	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	543
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	193, 330
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
Bbv12I	GWGCWC	2 cut(s)	394, 543
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	2 cut(s)	445, 637
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BcnI	CCSGG	2 cut(s)	216, 252
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	5 cut(s)	161, 285, 336, 369, 554
BfmI	CTRYAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	4 cut(s)	126, 129, 158, 608
BlsI	GCNGC	4 cut(s)	127, 130, 159, 609
Bme1390I	CCNGG	2 cut(s)	216, 252
Bme18I	GGWCC	1 cut(s)	669
BmgT120I	GGNCC	2 cut(s)	372, 669
BmiI	GGNNCC	5 cut(s)	108, 195, 220, 332, 671
BmrFI	CCNGG	2 cut(s)	216, 252
BmsI	GCATC	2 cut(s)	445, 478
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
Bpu10I	CCTNAGC	2 cut(s)	119, 465
BpuMI	CCSGG	2 cut(s)	216, 252
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	4 cut(s)	103, 142, 221, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 221, 275, 278, 381, 578
Bse118I	RCCGGY	3 cut(s)	4, 71, 271
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	246, 406, 460
BseLI	CCNNNNNNNGG	6 cut(s)	74, 221, 275, 278, 381, 578
BseMII	CTCAG	3 cut(s)	74, 164, 456
BseRI	GAGGAG	3 cut(s)	397, 419, 450
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	6 cut(s)	34, 53, 67, 157, 374, 563
BshNI	GGYRCC	2 cut(s)	193, 330
BshTI	ACCGGT	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	394, 543
BsiSI	CCGG	8 cut(s)	5, 72, 104, 143, 215, 222, 252, 272
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	6 cut(s)	74, 221, 275, 278, 381, 578
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	6 cut(s)	34, 53, 67, 157, 374, 563
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	394, 543
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	305
Bsp68I	TCGCGA	1 cut(s)	16
BspACI	CCGC	6 cut(s)	8, 75, 125, 128, 131, 158
BspANI	GGCC	6 cut(s)	34, 53, 67, 157, 374, 563
BspCNI	CTCAG	3 cut(s)	73, 163, 457
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	5 cut(s)	108, 195, 220, 332, 671
BspQI	GCTCTTC	2 cut(s)	90, 382
BspT107I	GGYRCC	2 cut(s)	193, 330
BspTNI	GGTCTC	1 cut(s)	502
BsrFI	RCCGGY	3 cut(s)	4, 71, 271
BssAI	RCCGGY	3 cut(s)	4, 71, 271
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	314, 421
Bst6I	CTCTTC	5 cut(s)	90, 250, 382, 500, 659
BstC8I	GCNNGC	2 cut(s)	6, 394
BstDEI	CTNAG	5 cut(s)	60, 119, 150, 465, 681
BstF5I	GGATG	3 cut(s)	246, 406, 460
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	1 cut(s)	308
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	305
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 115, 134, 686
BstSCI	CCNGG	2 cut(s)	214, 250
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	594
BsuRI	GGCC	6 cut(s)	34, 53, 67, 157, 374, 563
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	246, 406, 460
BtsIMutI	CAGTG	1 cut(s)	319
BtuMI	TCGCGA	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	6, 394
CaiI	CAGNNNCTG	1 cut(s)	661
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	3 cut(s)	4, 71, 271
Cfr13I	GGNCC	2 cut(s)	372, 669
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	271
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	5 cut(s)	60, 119, 150, 465, 681
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	5 cut(s)	90, 250, 382, 500, 659
EarI	CTCTTC	5 cut(s)	90, 250, 382, 500, 659
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	3 cut(s)	510, 638, 683
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	394
FaiI	YATR	1 cut(s)	356
FaqI	GGGAC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	126, 129, 158, 608
FokI	GGATG	3 cut(s)	253, 413, 467
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	126, 129, 158, 608
FspBI	CTAG	5 cut(s)	161, 285, 336, 369, 554
FspI	TGCGCA	1 cut(s)	517
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	4 cut(s)	126, 129, 158, 608
HaeIII	GGCC	6 cut(s)	34, 53, 67, 157, 374, 563
HapII	CCGG	8 cut(s)	5, 72, 104, 143, 215, 222, 252, 272
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	518
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HinfI	GANTC	5 cut(s)	11, 18, 148, 211, 247
HpaII	CCGG	8 cut(s)	5, 72, 104, 143, 215, 222, 252, 272
HphI	GGTGA	3 cut(s)	40, 157, 652
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	6 cut(s)	63, 83, 153, 278, 657, 711
Hpy188III	TCNNGA	4 cut(s)	15, 104, 452, 464
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	6 cut(s)	288, 333, 501, 534, 628, 679
HpyCH4III	ACNGT	2 cut(s)	314, 421
HpyCH4V	TGCA	2 cut(s)	362, 541
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 115, 134, 686
HpyF3I	CTNAG	5 cut(s)	60, 119, 150, 465, 681
HspAI	GCGC	1 cut(s)	516
Kpn2I	TCCGGA	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	305
LguI	GCTCTTC	2 cut(s)	90, 382
LmnI	GCTCC	2 cut(s)	106, 463
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	2 cut(s)	445, 478
MaeI	CTAG	5 cut(s)	161, 285, 336, 369, 554
MaeIII	GTNAC	4 cut(s)	145, 318, 484, 589
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MboII	GAAGA	7 cut(s)	107, 267, 399, 517, 613, 659, 676
MhlI	GDGCHC	2 cut(s)	394, 543
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	4 cut(s)	84, 363, 446, 546
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	4 cut(s)	20, 142, 205, 241
MmeI	TCCRAC	2 cut(s)	61, 256
Mox20I	TGGCCA	1 cut(s)	563
MroI	TCCGGA	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	2 cut(s)	501, 534
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	8 cut(s)	5, 72, 104, 143, 215, 222, 252, 272
MspR9I	CCNGG	2 cut(s)	216, 252
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	106, 115, 134, 686
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	216, 252
NdeII	GATC	1 cut(s)	305
NgoMIV	GCCGGC	1 cut(s)	4
NlaIV	GGNNCC	5 cut(s)	108, 195, 220, 332, 671
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	145, 484
NruI	TCGCGA	1 cut(s)	16
NsbI	TGCGCA	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	2 cut(s)	90, 382
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	18
PfoI	TCCNGGA	2 cut(s)	214, 250
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	127, 130, 159, 609
PleI	GAGTC	4 cut(s)	19, 142, 205, 241
PpsI	GAGTC	4 cut(s)	19, 142, 205, 241
PpuMI	RGGWCCY	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	669
PspN4I	GGNNCC	5 cut(s)	108, 195, 220, 332, 671
PspPI	GGNCC	2 cut(s)	372, 669
PspPPI	RGGWCCY	1 cut(s)	669
PstNI	CAGNNNCTG	1 cut(s)	661
RruI	TCGCGA	1 cut(s)	16
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	394
SapI	GCTCTTC	2 cut(s)	90, 382
SaqAI	TTAA	2 cut(s)	501, 534
SatI	GCNGC	4 cut(s)	126, 129, 158, 608
Sau3AI	GATC	1 cut(s)	305
Sau96I	GGNCC	2 cut(s)	372, 669
SchI	GAGTC	4 cut(s)	20, 142, 205, 241
ScrFI	CCNGG	2 cut(s)	216, 252
SduI	GDGCHC	2 cut(s)	394, 543
SfaNI	GCATC	2 cut(s)	445, 478
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	669
Sse9I	AATT	4 cut(s)	84, 363, 446, 546
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	6 cut(s)	8, 75, 125, 128, 131, 158
SspMI	CTAG	5 cut(s)	161, 285, 336, 369, 554
SstI	GAGCTC	1 cut(s)	394
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	214, 250
TaaI	ACNGT	2 cut(s)	314, 421
TaqI	TCGA	4 cut(s)	39, 93, 308, 617
TasI	AATT	4 cut(s)	84, 363, 446, 546
TauI	GCSGC	3 cut(s)	128, 131, 160
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	501, 534
Tru9I	TTAA	2 cut(s)	501, 534
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	145, 484
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	2 cut(s)	145, 484
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	319
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	669
XapI	RAATTY	2 cut(s)	84, 546
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	5 cut(s)	161, 285, 336, 369, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.