Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Reverse (-)

7309620 .. 7312575

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1062400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCTGAAGCGAGAGATCGATTGTCAAGGCCGGTTGACCTAGCCACAGCCTATGCACAGAGGTTGGCCGGCAACCGGAGAGTATACATTGATCTGCCAGAGCAGACTATTTTAGCCTTTTCTCCTCCGGTGAGACTACCAACAGGCTTGGGGATTGGAGCTACCGGAGTTGTTGGTGTAGGAGGGCTCCCTAGGAGCAGTTTGAGGACTCCAAGAACTGTGACTGGGCGTGGTCGGATCTCATTTAGGTTGTCAACGGTGGACAGAGAGAACACACCGAGTGGGAGTTCTCACCGGAGAAGGGGCCGATCTAGTAACAGCGTGTTGCCTTCTTGGTACCCGAGAACCCCTCTCCACGATATCACTGCTGTAACTAGGGCTATTGAAAGGAGAAGAGCTCGTTTGGCTGAGAGCAATGGCGAAAACACTGAGGGTCAAGCTCCACAAGACCAGAATGCCCTTGATCAGTCTCTTCCAGTGTTAGGTGCTCAATTTGATCATGGTGTTCCTGTGACTCCGTATTCAGCTCTTCGTACCAAGCGCCGCTTACCTCCTCCTGTTGTTAAAGTTCAAAAAATTATAAGGGACGTCAGTAATCAGCCCTCTGAAGGAGAATTTCTTACACCACAAAAGAAACTAATGAACTCAATTGACATGGTGGAGGAAGTGGTCAGGAAAGAACTTGAGAGGCTTAAGAGAACGCCTAGCGCCAAGAAGGCTGAGAGGGAGCAAAAGGTCCGAACTCTGATGTCAATGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.18

Weight (kDa)

11.22

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AatII	GACGTC	1 cut(s)	591
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	2 cut(s)	27, 627
AcyI	GRCGYC	1 cut(s)	588
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	338, 535
AfiI	CCNNNNNNNGG	4 cut(s)	75, 301, 482, 608
AflII	CTTAAG	1 cut(s)	692
AgsI	TTSAA	2 cut(s)	386, 572
AluBI	AGCT	4 cut(s)	161, 398, 440, 527
AluI	AGCT	4 cut(s)	161, 398, 440, 527
Alw21I	GWGCWC	2 cut(s)	400, 490
Alw26I	GTCTC	2 cut(s)	127, 474
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	3 cut(s)	29, 66, 304
ApoI	RAATTY	1 cut(s)	614
Asp718I	GGTACC	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	543, 710, 759
AspS9I	GGNCC	2 cut(s)	304, 736
AsuHPI	GGTGA	2 cut(s)	142, 284
AvaI	CYCGRG	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	736
AvrII	CCTAGG	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	2 cut(s)	189, 400
Bbv12I	GWGCWC	2 cut(s)	400, 490
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BclI	TGATCA	2 cut(s)	463, 496
BcoDI	GTCTC	2 cut(s)	127, 474
BfaI	CTAG	5 cut(s)	41, 192, 312, 375, 705
BfoI	RGCGCY	2 cut(s)	544, 711
BfrI	CTTAAG	1 cut(s)	692
BglI	GCCNNNNNGGC	1 cut(s)	716
BisI	GCNGC	1 cut(s)	544
BlnI	CCTAGG	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	304, 736
BmiI	GGNNCC	3 cut(s)	188, 305, 338
BmrI	ACTGGG	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	234
BplI	GAGNNNNNCTC	4 cut(s)	334, 366, 382, 414
BpuEI	CTTGAG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	4 cut(s)	75, 127, 164, 294
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 301, 482, 608
Bse118I	RCCGGY	2 cut(s)	31, 68
Bse1I	ACTGG	2 cut(s)	229, 476
Bse3DI	GCAATG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	4 cut(s)	75, 301, 482, 608
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	3 cut(s)	399, 420, 711
BseNI	ACTGG	2 cut(s)	229, 476
BseRI	GAGGAG	2 cut(s)	114, 543
BshFI	GGCC	3 cut(s)	31, 68, 306
BshNI	GGYRCC	1 cut(s)	336
BshVI	ATCGAT	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	400, 490
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	6 cut(s)	32, 69, 76, 128, 165, 295
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	4 cut(s)	75, 301, 482, 608
BsmAI	GTCTC	2 cut(s)	127, 474
BsmFI	GGGAC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	31, 68, 306
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	3 cut(s)	189, 400, 490
Bsp143I	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
BspACI	CCGC	1 cut(s)	544
BspANI	GGCC	3 cut(s)	31, 68, 306
BspCNI	CTCAG	3 cut(s)	400, 421, 712
BspDI	ATCGAT	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	188, 305, 338
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	2 cut(s)	388, 534
BspT107I	GGYRCC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	2 cut(s)	31, 68
BsrI	ACTGG	2 cut(s)	229, 476
BssAI	RCCGGY	2 cut(s)	31, 68
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
BssNAI	GTATAC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	191
Bst1107I	GTATAC	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	220, 259
Bst6I	CTCTTC	3 cut(s)	388, 477, 534
BstACI	GRCGYC	1 cut(s)	588
BstAFI	CTTAAG	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	408, 429, 720
BstH2I	RGCGCY	2 cut(s)	544, 711
BstHHI	GCGC	3 cut(s)	543, 710, 759
BstKTI	GATC	6 cut(s)	19, 94, 240, 311, 466, 499
BstMAI	GTCTC	2 cut(s)	127, 474
BstMBI	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 716
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BstZ17I	GTATAC	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	31, 68, 306
BsuTUI	ATCGAT	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	363, 426, 483
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	3 cut(s)	543, 710, 759
Cfr10I	RCCGGY	2 cut(s)	31, 68
Cfr13I	GGNCC	2 cut(s)	304, 736
ClaI	ATCGAT	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	337, 534
CviAII	CATG	2 cut(s)	500, 655
CviQI	GTAC	2 cut(s)	337, 534
DdeI	CTNAG	3 cut(s)	408, 429, 720
DpnI	GATC	6 cut(s)	18, 93, 239, 310, 465, 498
DpnII	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
DraIII	CACNNNGTG	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	388, 477, 534
EarI	CTCTTC	3 cut(s)	388, 477, 534
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	2 cut(s)	189, 400
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	736
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	27, 627
Eco88I	CYCGRG	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	189, 400
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	2 cut(s)	503, 658
FaiI	YATR	5 cut(s)	54, 85, 501, 581, 656
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	2 cut(s)	499, 654
FbaI	TGATCA	2 cut(s)	463, 496
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	544
FriOI	GRGCYC	2 cut(s)	189, 400
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	5 cut(s)	41, 192, 312, 375, 705
GlaI	GCGC	3 cut(s)	542, 709, 758
GluI	GCNGC	1 cut(s)	544
HaeII	RGCGCY	2 cut(s)	544, 711
HaeIII	GGCC	3 cut(s)	31, 68, 306
HapII	CCGG	6 cut(s)	32, 69, 76, 128, 165, 295
HhaI	GCGC	3 cut(s)	543, 710, 759
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	2 cut(s)	503, 658
Hin6I	GCGC	3 cut(s)	541, 708, 757
HinP1I	GCGC	3 cut(s)	541, 708, 757
HincII	GTYRAC	2 cut(s)	37, 255
HindII	GTYRAC	2 cut(s)	37, 255
HinfI	GANTC	2 cut(s)	208, 514
HpaII	CCGG	6 cut(s)	32, 69, 76, 128, 165, 295
HphI	GGTGA	2 cut(s)	142, 284
Hpy166II	GTNNAC	4 cut(s)	37, 85, 255, 262
Hpy188I	TCNGA	4 cut(s)	237, 607, 740, 747
Hpy188III	TCNNGA	1 cut(s)	673
Hpy8I	GTNNAC	4 cut(s)	37, 85, 255, 262
HpyAV	CCTTC	4 cut(s)	294, 339, 602, 709
HpyCH4III	ACNGT	2 cut(s)	220, 259
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 716
HpyF3I	CTNAG	3 cut(s)	408, 429, 720
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	2 cut(s)	503, 658
HspAI	GCGC	3 cut(s)	541, 708, 757
KpnI	GGTACC	1 cut(s)	340
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	2 cut(s)	463, 496
Kzo9I	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
LguI	GCTCTTC	2 cut(s)	388, 534
LmnI	GCTCC	5 cut(s)	158, 192, 195, 445, 727
MaeI	CTAG	5 cut(s)	41, 192, 312, 375, 705
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	4 cut(s)	220, 314, 370, 511
MalI	GATC	6 cut(s)	18, 93, 239, 310, 465, 498
MboI	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
MboII	GAAGA	3 cut(s)	405, 464, 521
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	189, 400, 490
MluCI	AATT	4 cut(s)	491, 576, 614, 648
MlyI	GAGTC	2 cut(s)	202, 508
MmeI	TCCRAC	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	2 cut(s)	564, 693
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	6 cut(s)	32, 69, 76, 128, 165, 295
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	460
MwoI	GCNNNNNNNGC	2 cut(s)	404, 716
NaeI	GCCGGC	1 cut(s)	70
NdeII	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	503, 658
NlaIV	GGNNCC	3 cut(s)	188, 305, 338
NmuCI	GTSAC	2 cut(s)	220, 511
PciSI	GCTCTTC	2 cut(s)	388, 534
PctI	GAATGC	1 cut(s)	460
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	2 cut(s)	202, 508
PpsI	GAGTC	2 cut(s)	202, 508
PsiI	TTATAA	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	188, 305, 338
PspPI	GGNCC	2 cut(s)	304, 736
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	2 cut(s)	338, 535
RsaNI	GTAC	2 cut(s)	337, 534
SacI	GAGCTC	1 cut(s)	400
SapI	GCTCTTC	2 cut(s)	388, 534
SaqAI	TTAA	2 cut(s)	564, 693
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	6 cut(s)	16, 91, 237, 308, 463, 496
Sau96I	GGNCC	2 cut(s)	304, 736
SchI	GAGTC	2 cut(s)	202, 508
SduI	GDGCHC	3 cut(s)	189, 400, 490
SinI	GGWCC	1 cut(s)	736
SmlI	CTYRAG	2 cut(s)	683, 692
SmoI	CTYRAG	2 cut(s)	683, 692
Sse9I	AATT	4 cut(s)	491, 576, 614, 648
SsiI	CCGC	1 cut(s)	544
SspMI	CTAG	5 cut(s)	41, 192, 312, 375, 705
SstI	GAGCTC	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	220, 259
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	491, 576, 614, 648
TauI	GCSGC	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	564, 693
Tru9I	TTAA	2 cut(s)	564, 693
TscAI	CASTG	3 cut(s)	370, 433, 483
TseFI	GTSAC	2 cut(s)	220, 511
Tsp45I	GTSAC	2 cut(s)	220, 511
TspDTI	ATGAA	1 cut(s)	656
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	3 cut(s)	370, 433, 483
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	1 cut(s)	614
XmaJI	CCTAGG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	5 cut(s)	41, 192, 312, 375, 705
ZraI	GACGTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.