Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00657

Orthogroup ID

OG0001662

Physical Location & Seq

Genomic Coordinates Forward (+)

36176 .. 37982

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCGGTGGAGTCTAGATTCAGGCTGGAGAGGCCGTTTGACATCGCGGAGGCCTTTTCTCAAAGGCGATCTGGCTCGCTTGCGGTTCTAATCGATCAGCGCGTGGAGTCGTTGGAATCGCCGGCGAGGCGGAGGGCGTTAGCGACACCGGTGCATCAGAGACGGCTAGGGTTATGGGCCGCAGGAGGTGATGGGCTCGCGCGGAGCAGAATGAGGACACCGAGAGCCGCGATTGGTCAAGAGAATGTGATGCTGGCCGGAAGTTCTAGCCGGAGAAGGGGACGGGGATCGAACAGTGTGTTGCCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCGATTACCAGGGCCATTGAGAGGAGAAGAGCTCGCTTGGGTGAGGGAATGGCGAAACTGCAGAGGGTCAATTTCCATCTCTACAAGGTCAGGATGCTCCCCCTGAGCATCAATGCACAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGGAGGTTCGTTACACCACAGAAGAAGCTGCTGAACTCAATTGACAAAGTTGAGAAGGTAGTGTTGGAAGAACTTCAGAGGCAGAAGAGGACGCCTAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.56

Weight (kDa)

11.68

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42260 AT2G42260 AT3G57860
fragaria_vesca	FvH4_1g24920 FvH4_6g18600
malus_domestica	MD12G1062400.v1.1 MD14G1063100.v1.1
prunus_persica	Prupe.7G071700_v2.0.a1
pyrus_communis	pycom14g05090
rosa_chinensis	RchiOBHm_Chr3g0473161 RchiOBHm_Chr3g0473181 RchiOBHm_Chr7g0219161
rosa_laevigata	RLG00000002322 RLG00000002349 RLG00000002350 RLG00000015134 RLG00000024022 RLG00000024024
rosa_multiflora	Rmu_sc0001539.1_g000007 Rmu_sc0003069.1_g000059 Rmu_sc0003069.1_g000060 Rmu_sc0039741.1_g000001 Rmu_sc0040292.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240460 Rroxscaffold_6G00408240 Rroxscaffold_6G00408260
rosa_rugosa	Rorug03G0131900 Rorug03G0132000 Rorug03G0132100 Rorug07G0183500
rosa_samantha	Rh3AG183500 Rh3AG183700 Rh3BG209900 Rh3BG210200 Rh3CG207000 Rh3CG207300 Rh3DG207100 Rh3DG207300 Rh7AG325800 Rh7AG326200 Rh7CG342900 Rh7CG343200 Rh7DG321500
rosa_wichuraiana	Rw0G008100 Rw0G008120 Rw0G014730 Rw0G014750 Rw0G019040 Rw7G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	47, 102, 200, 202, 230
AciI	CCGC	6 cut(s)	47, 83, 130, 180, 202, 228
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	277, 363, 494
AgeI	ACCGGT	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	2 cut(s)	374, 523
AluI	AGCT	2 cut(s)	374, 523
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	5 cut(s)	32, 51, 177, 255, 354
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	462
AsiGI	ACCGGT	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	102, 202
AspS9I	GGNCC	2 cut(s)	177, 354
AsuHPI	GGTGA	2 cut(s)	200, 395
AsuII	TTCGAA	1 cut(s)	625
BanII	GRGCYC	2 cut(s)	198, 376
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	2 cut(s)	185, 426
BceAI	ACGGC	2 cut(s)	19, 179
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	5 cut(s)	15, 167, 267, 470, 591
BfmI	CTRYAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	180, 228, 524
BlsI	GCNGC	3 cut(s)	181, 229, 525
Bme1390I	CCNGG	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	177, 354
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	4 cut(s)	163, 240, 426, 459
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	625
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 363, 494
Bse118I	RCCGGY	3 cut(s)	4, 121, 148
BseBI	CCWGG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	277, 363, 494
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	510
Bsh1236I	CGCG	5 cut(s)	47, 102, 200, 202, 230
BshFI	GGCC	5 cut(s)	34, 53, 179, 257, 356
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	5 cut(s)	5, 122, 149, 258, 271
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	277, 363, 494
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	5 cut(s)	34, 53, 179, 257, 356
Bsp119I	TTCGAA	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	198, 376
Bsp143I	GATC	3 cut(s)	68, 94, 287
BspACI	CCGC	6 cut(s)	47, 83, 130, 180, 202, 228
BspANI	GGCC	5 cut(s)	34, 53, 179, 257, 356
BspCNI	CTCAG	1 cut(s)	438
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	5 cut(s)	47, 102, 200, 202, 230
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	625
BsrFI	RCCGGY	3 cut(s)	4, 121, 148
BssAI	RCCGGY	3 cut(s)	4, 121, 148
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	68, 94, 287
BssNI	GRCGYC	1 cut(s)	587
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	364, 575
BstACI	GRCGYC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	6 cut(s)	77, 81, 123, 198, 255, 376
BstDEI	CTNAG	2 cut(s)	446, 597
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	5 cut(s)	47, 102, 200, 202, 230
BstHHI	GCGC	2 cut(s)	102, 202
BstKTI	GATC	3 cut(s)	71, 97, 290
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	68, 94, 287
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 127, 602
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	5 cut(s)	47, 102, 200, 202, 230
BstV1I	GCAGC	1 cut(s)	510
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	34, 53, 179, 257, 356
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	6 cut(s)	77, 81, 123, 198, 255, 376
CfoI	GCGC	2 cut(s)	102, 202
Cfr10I	RCCGGY	3 cut(s)	4, 121, 148
Cfr13I	GGNCC	2 cut(s)	177, 354
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	595
CspAI	ACCGGT	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	446, 597
DpnI	GATC	3 cut(s)	70, 96, 289
DpnII	GATC	3 cut(s)	68, 94, 287
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	364, 575
EarI	CTCTTC	2 cut(s)	364, 575
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	374
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	198, 376
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	198, 376
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	2 cut(s)	175, 338
FaqI	GGGAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	180, 228, 524
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	2 cut(s)	198, 376
Fsp4HI	GCNGC	3 cut(s)	180, 228, 524
FspBI	CTAG	5 cut(s)	15, 167, 267, 470, 591
GlaI	GCGC	2 cut(s)	101, 201
GluI	GCNGC	3 cut(s)	180, 228, 524
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	5 cut(s)	34, 53, 179, 257, 356
HapII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HgaI	GACGC	1 cut(s)	595
HhaI	GCGC	2 cut(s)	102, 202
Hin1I	GRCGYC	1 cut(s)	587
Hin6I	GCGC	2 cut(s)	100, 200
HinP1I	GCGC	2 cut(s)	100, 200
HinfI	GANTC	4 cut(s)	11, 18, 107, 116
HpaII	CCGG	5 cut(s)	5, 122, 149, 258, 271
HphI	GGTGA	2 cut(s)	200, 395
Hpy188I	TCNGA	2 cut(s)	159, 573
Hpy188III	TCNNGA	3 cut(s)	15, 239, 433
HpyAV	CCTTC	4 cut(s)	270, 315, 544, 595
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	154, 403, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 127, 602
HpyF3I	CTNAG	2 cut(s)	446, 597
Hsp92I	GRCGYC	1 cut(s)	587
HspAI	GCGC	2 cut(s)	100, 200
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	68, 94, 287
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	204, 444
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	4 cut(s)	163, 240, 426, 459
MaeI	CTAG	5 cut(s)	15, 167, 267, 470, 591
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	70, 96, 289
MboI	GATC	3 cut(s)	68, 94, 287
MboII	GAAGA	4 cut(s)	381, 529, 575, 592
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	2 cut(s)	198, 376
MluCI	AATT	3 cut(s)	412, 462, 534
MlyI	GAGTC	2 cut(s)	20, 116
MmeI	TCCRAC	2 cut(s)	93, 540
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	567
MspI	CCGG	5 cut(s)	5, 122, 149, 258, 271
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	5 cut(s)	47, 102, 200, 202, 230
MwoI	GCNNNNNNNGC	3 cut(s)	31, 127, 602
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	68, 94, 287
NgoMIV	GCCGGC	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	18, 116
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	181, 229, 525
PleI	GAGTC	2 cut(s)	19, 115
PpsI	GAGTC	2 cut(s)	19, 115
Psp124BI	GAGCTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	177, 354
PstI	CTGCAG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	364
SatI	GCNGC	3 cut(s)	180, 228, 524
Sau3AI	GATC	3 cut(s)	68, 94, 287
Sau96I	GGNCC	2 cut(s)	177, 354
SchI	GAGTC	2 cut(s)	20, 116
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	2 cut(s)	198, 376
SetI	ASST	8 cut(s)	190, 376, 432, 477, 503, 525, 555, 624
SfaNI	GCATC	4 cut(s)	163, 240, 426, 459
SfcI	CTRYAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	625
SgrAI	CRCCGGYG	2 cut(s)	121, 148
Sse9I	AATT	3 cut(s)	412, 462, 534
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	6 cut(s)	47, 83, 130, 180, 202, 228
SspMI	CTAG	5 cut(s)	15, 167, 267, 470, 591
SstI	GAGCTC	1 cut(s)	376
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	93, 290, 625
TasI	AATT	3 cut(s)	412, 462, 534
TauI	GCSGC	2 cut(s)	182, 230
TfiI	GAWTC	2 cut(s)	18, 116
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	523
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	462
XbaI	TCTAGA	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	5 cut(s)	15, 167, 267, 470, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.