Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

1285425 .. 1286760

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGATCAGACTTAGCATAACCATCATACTTTTATCATACACAGTGGCTACGGTGGCCGGACAACAATGCGGTCGTCAAGGCGGTGGTCGAACTTGTCCCGGTAACATCTGCTGCAGTCAGTACGGTTACTGTGGTACCACCGCGGACTACTGTTCTCCGACCAACAACTGTCAGAGCAATTGTTGGGGAAGTGGGCCTAGCGGACCAGGGGAGAGCGCGTCGAACGTACGCGCCACCTACCATTTCTATAATCCGGCGCAGAATAATTGGGATTTGAGAGCCGTGAGTGCTTATTGCTCCACGTGGGATGCTGATAAGCCGTACGCATGGCGGAGCAAGTATGGCTGGACCGCCTTCTGCGGGCCGGCAGGACCTCGTGGTCAAGCTTCTTGCGGCAAGTGTTTAAGGGTGAAGAACACAAGAACAAATGCTGCAGTAACTGTGAGAATAGTGGACCAATGCAGCAACGGAGGCTTGGATTTGGATGTAGCAATGTTCAATCAAATAGACACCGATGGTTTTGGCTATCAACAAGGCCATCTCATTGTTGACTACCAATTTGTCGACTGTGGCAATGAGCTCATTGGGCAGCCTGATTCCAGAAACATGCTTGTTTCGGCCATTGATCGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045087 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080027 GO:0090304 GO:0090305 GO:0090501 GO:0097367 GO:0098542 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin Chitin_bind_1

Protein Analysis

212

Amino Acids

22.94

Weight (kDa)

7.89

Isoelectric Point (pI)

22.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	23 - 62	1.9e-13	Chitin recognition protein
Barwin	PF00967	73 - 191	1.5e-68	Barwin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	381
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	4 cut(s)	146, 221, 234, 633
AciI	CCGC	9 cut(s)	72, 84, 144, 146, 204, 334, 354, 363, 396
AcoI	YGGCCR	2 cut(s)	57, 621
AcvI	CACGTG	1 cut(s)	306
AfaI	GTAC	4 cut(s)	125, 139, 231, 326
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	389, 583
AluI	AGCT	2 cut(s)	389, 583
Alw21I	GWGCWC	1 cut(s)	585
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	5 cut(s)	57, 197, 365, 538, 621
ApeKI	GCWGC	4 cut(s)	114, 434, 465, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp718I	GGTACC	1 cut(s)	137
AspLEI	GCGC	3 cut(s)	221, 236, 262
AspS9I	GGNCC	6 cut(s)	197, 206, 351, 365, 374, 457
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	4 cut(s)	206, 351, 374, 457
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	585
BauI	CACGAG	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	4 cut(s)	101, 421, 477, 604
BccI	CCATC	3 cut(s)	32, 512, 549
BceAI	ACGGC	2 cut(s)	269, 307
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	2 cut(s)	115, 435
BisI	GCNGC	5 cut(s)	115, 397, 435, 466, 593
BlsI	GCNGC	5 cut(s)	116, 398, 436, 467, 594
Bme1390I	CCNGG	2 cut(s)	102, 210
Bme18I	GGWCC	4 cut(s)	206, 351, 374, 457
BmgT120I	GGNCC	6 cut(s)	197, 206, 351, 365, 374, 457
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	102, 210
BmsI	GCATC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	144, 209
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse118I	RCCGGY	1 cut(s)	367
Bse3DI	GCAATG	2 cut(s)	501, 583
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	144, 209
BseGI	GGATG	2 cut(s)	316, 493
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	2 cut(s)	501, 583
BseXI	GCAGC	4 cut(s)	101, 421, 477, 604
Bsh1236I	CGCG	4 cut(s)	146, 221, 234, 633
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	5 cut(s)	59, 199, 367, 540, 623
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	4 cut(s)	60, 102, 257, 368
BsiWI	CGTACG	2 cut(s)	229, 324
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	5 cut(s)	59, 199, 367, 540, 623
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	2 cut(s)	6, 628
BspACI	CCGC	9 cut(s)	72, 84, 144, 146, 204, 334, 354, 363, 396
BspANI	GGCC	5 cut(s)	59, 199, 367, 540, 623
BspFNI	CGCG	4 cut(s)	146, 221, 234, 633
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	2 cut(s)	119, 439
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	501, 583
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	144, 209
BssMI	GATC	2 cut(s)	6, 628
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	8 cut(s)	46, 55, 128, 134, 155, 173, 445, 572
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	365, 369
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	316, 493
BstFNI	CGCG	4 cut(s)	146, 221, 234, 633
BstHHI	GCGC	3 cut(s)	221, 236, 262
BstKTI	GATC	2 cut(s)	9, 631
BstMBI	GATC	2 cut(s)	6, 628
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 290, 345, 474, 589
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	100, 208
BstSFI	CTRYAG	2 cut(s)	115, 435
BstUI	CGCG	4 cut(s)	146, 221, 234, 633
BstV1I	GCAGC	4 cut(s)	101, 421, 477, 604
BsuRI	GGCC	5 cut(s)	59, 199, 367, 540, 623
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	316, 493
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	365, 369
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	3 cut(s)	221, 236, 262
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	6 cut(s)	197, 206, 351, 365, 374, 457
Cfr42I	CCGCGG	1 cut(s)	147
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	4 cut(s)	124, 138, 230, 325
CviAII	CATG	2 cut(s)	330, 610
CviQI	GTAC	4 cut(s)	124, 138, 230, 325
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	8, 630
DpnII	GATC	2 cut(s)	6, 628
DrdI	GACNNNNNNGTC	1 cut(s)	381
DseDI	GACNNNNNNGTC	1 cut(s)	381
EaeI	YGGCCR	2 cut(s)	57, 621
EciI	GGCGGA	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco47I	GGWCC	4 cut(s)	206, 351, 374, 457
Eco53kI	GAGCTC	1 cut(s)	583
Eco72I	CACGTG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	2 cut(s)	333, 613
FaiI	YATR	7 cut(s)	20, 29, 40, 252, 331, 345, 611
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	329, 609
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	115, 397, 435, 466, 593
FokI	GGATG	2 cut(s)	323, 500
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	5 cut(s)	115, 397, 435, 466, 593
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	3 cut(s)	220, 235, 261
GluI	GCNGC	5 cut(s)	115, 397, 435, 466, 593
HaeIII	GGCC	5 cut(s)	59, 199, 367, 540, 623
HapII	CCGG	4 cut(s)	60, 102, 257, 368
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	3 cut(s)	221, 236, 262
Hin1II	CATG	2 cut(s)	333, 613
Hin6I	GCGC	3 cut(s)	219, 234, 260
HinP1I	GCGC	3 cut(s)	219, 234, 260
HincII	GTYRAC	2 cut(s)	553, 568
HindII	GTYRAC	2 cut(s)	553, 568
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	4 cut(s)	60, 102, 257, 368
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	457, 553, 568
Hpy188I	TCNGA	3 cut(s)	11, 162, 177
Hpy188III	TCNNGA	1 cut(s)	603
Hpy8I	GTNNAC	3 cut(s)	457, 553, 568
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	8 cut(s)	46, 55, 128, 134, 155, 173, 445, 572
HpyCH4IV	ACGT	2 cut(s)	228, 305
HpyCH4V	TGCA	3 cut(s)	117, 437, 465
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 290, 345, 474, 589
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	2 cut(s)	228, 305
Hsp92II	CATG	2 cut(s)	333, 613
HspAI	GCGC	3 cut(s)	219, 234, 260
KpnI	GGTACC	1 cut(s)	141
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
KspI	CCGCGG	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	6, 628
LmnI	GCTCC	2 cut(s)	305, 336
Lsp1109I	GCAGC	4 cut(s)	101, 421, 477, 604
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	228, 305
MaeIII	GTNAC	3 cut(s)	104, 128, 439
MalI	GATC	2 cut(s)	8, 630
MboI	GATC	2 cut(s)	6, 628
MboII	GAAGA	2 cut(s)	16, 427
MfeI	CAATTG	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	3 cut(s)	181, 268, 560
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	387, 467
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	4 cut(s)	60, 102, 257, 368
MspR9I	CCNGG	2 cut(s)	102, 210
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	4 cut(s)	146, 221, 234, 633
MwoI	GCNNNNNNNGC	5 cut(s)	56, 290, 345, 474, 589
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	6, 628
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	333, 613
NlaIV	GGNNCC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	613
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	599
Pfl23II	CGTACG	2 cut(s)	229, 324
PkrI	GCNGC	5 cut(s)	116, 398, 436, 467, 594
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	208
PspCI	CACGTG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	208
PspLI	CGTACG	2 cut(s)	229, 324
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	6 cut(s)	197, 206, 351, 365, 374, 457
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	2 cut(s)	119, 439
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	125, 139, 231, 326
RsaNI	GTAC	4 cut(s)	124, 138, 230, 325
SacI	GAGCTC	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	5 cut(s)	115, 397, 435, 466, 593
Sau3AI	GATC	2 cut(s)	6, 628
Sau96I	GGNCC	6 cut(s)	197, 206, 351, 365, 374, 457
ScrFI	CCNGG	2 cut(s)	102, 210
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	6 cut(s)	231, 242, 308, 379, 391, 585
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	2 cut(s)	115, 435
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	4 cut(s)	206, 351, 374, 457
Sse9I	AATT	3 cut(s)	181, 268, 560
SsiI	CCGC	9 cut(s)	72, 84, 144, 146, 204, 334, 354, 363, 396
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	100, 208
TaaI	ACNGT	8 cut(s)	46, 55, 128, 134, 155, 173, 445, 572
TaiI	ACGT	2 cut(s)	231, 308
TaqI	TCGA	3 cut(s)	91, 224, 567
TasI	AATT	3 cut(s)	181, 268, 560
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	4 cut(s)	114, 434, 465, 592
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	4 cut(s)	206, 351, 374, 457
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.