RchiOBHm_Chr3g0450891

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000898
Physical Location & Seq
Reverse (-)
2246948 .. 2247458
511 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41820

Sequence Viewer

Length: 366 bp
ATGGCCGGGAAGATGAGCATTGTCTTGTTACTTATCTTCTGTGCAATAGTGGGAAATGCTTCTGCTACTTCTAATGAGCCTTGCGCAATATTTGATGTCAATCAGCCCTTCGAATGGCGCAGCAGGTATGGATGGACCGCCTTCTGCGGACCTGAAGGCCCTAGCGGAGCAGATGCCTGCGGAAAATGCCTACTGGTGACGAACATGGGGACAGGAGCTCAGGAAATAGTGAGAATTATCGATCAGTGCAGCAATGGAGGTTTGGATTTGGATGCGAATGTGTCTTCCCAGATAGACACTGATGGAAGAGGCTATGCACAAGGCGACCTTATTGTCAACTACGACTTTGTGGACTGCGGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

121

Amino Acids

12.78

Weight (kDa)

4.06

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 25 - 119 8.9e-39 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 114
AciI CCGC 5 cut(s) 138, 147, 165, 180, 357
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 220
AoxI GGCC 2 cut(s) 3, 157
ApeKI GCWGC 2 cut(s) 120, 249
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 2 cut(s) 86, 120
AspS9I GGNCC 3 cut(s) 135, 149, 158
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 2 cut(s) 135, 149
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 132, 261
BccI CCATC 2 cut(s) 126, 296
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 114
BisI GCNGC 3 cut(s) 121, 250, 358
BlsI GCNGC 3 cut(s) 122, 251, 359
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 135, 149
BmgT120I GGNCC 3 cut(s) 135, 149, 158
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 2 cut(s) 163, 262
BpiI GAAGAC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 7
Bsa29I ATCGAT 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 240
BseGI GGATG 2 cut(s) 137, 277
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 132, 261
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 2 cut(s) 5, 159
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 5, 159
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 5 cut(s) 138, 147, 165, 180, 357
BspANI GGCC 2 cut(s) 5, 159
BspCNI CTCAG 1 cut(s) 232
BspDI ATCGAT 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 137, 277
BstHHI GCGC 2 cut(s) 86, 120
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 132, 261
BstV2I GAAGAC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 2 cut(s) 5, 159
BsuTUI ATCGAT 1 cut(s) 240
BtsCI GGATG 2 cut(s) 137, 277
BtsIMutI CAGTG 2 cut(s) 251, 297
BveI ACCTGC 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 2 cut(s) 86, 120
Cfr13I GGNCC 3 cut(s) 135, 149, 158
ClaI ATCGAT 1 cut(s) 240
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 5, 79, 106, 159, 218, 312
CviKI_1 RGCY 6 cut(s) 5, 79, 106, 159, 218, 312
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 135, 149
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 129, 206, 315
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 121, 250, 358
FokI GGATG 2 cut(s) 144, 284
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 121, 250, 358
FspBI CTAG 1 cut(s) 162
FspI TGCGCA 1 cut(s) 85
GlaI GCGC 2 cut(s) 85, 119
GluI GCNGC 3 cut(s) 121, 250, 358
HaeIII GGCC 2 cut(s) 5, 159
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 86, 120
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 2 cut(s) 84, 118
HinP1I GCGC 2 cut(s) 84, 118
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 337, 352
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 337, 352
HpyAV CCTTC 3 cut(s) 118, 149, 151
HpyCH4V TGCA 3 cut(s) 44, 249, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 2 cut(s) 84, 118
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 2 cut(s) 167, 215
LpnPI CCDG 8 cut(s) 19, 109, 165, 179, 190, 198, 206, 302
Lsp1109I GCAGC 2 cut(s) 132, 261
LweI GCATC 2 cut(s) 163, 262
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 27, 196
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 4 cut(s) 22, 28, 276, 318
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 1 cut(s) 234
MnlI CCTC 2 cut(s) 251, 302
MroXI GAANNNNTTC 1 cut(s) 58
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 186
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 196
NsbI TGCGCA 1 cut(s) 85
NspV TTCGAA 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 58
PkrI GCNGC 3 cut(s) 122, 251, 359
Psp124BI GAGCTC 1 cut(s) 220
PspPI GGNCC 3 cut(s) 135, 149, 158
SacI GAGCTC 1 cut(s) 220
SatI GCNGC 3 cut(s) 121, 250, 358
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 3 cut(s) 135, 149, 158
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 128, 154, 220, 262, 330
SfaNI GCATC 2 cut(s) 163, 262
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 135, 149
Sse9I AATT 1 cut(s) 234
SsiI CCGC 5 cut(s) 138, 147, 165, 180, 357
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 5
TaqI TCGA 2 cut(s) 111, 240
TasI AATT 1 cut(s) 234
TauI GCSGC 1 cut(s) 360
TscAI CASTG 2 cut(s) 251, 304
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 120, 249
Tsp45I GTSAC 1 cut(s) 196
TspRI CASTG 2 cut(s) 251, 304
VpaK11BI GGWCC 2 cut(s) 135, 149
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.