Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Forward (+)

29589981 .. 29590792

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATGAGGCCATGTTGCTGTGCCTGTGTGGTGTTATTTTGCATGATTCTGGTGGGAAGTGCTTGGGGACAGAGTGCTACAAATGTCAGATCCACATACCACTTGTACAACCCGCAGCAGAACAACTGGGACTTGCGGGCTGTAAGTGCCTACTGCGCCACATGGGATGCCGATCAGCCCTTTGCATGGCGCAGCAAATATGGCTGGACTGCCTTCTGCGGCCCTGTTGGCCCTACCGGACAAGATGCTTGTGGAAAGTGCCTCTTGGTGACAAACACTAGGACAGGGGATCAAGTAACAGTGAGGATTGTGGATCAGTGCAGCAACGGAGGCTTAGACTTGGACGTGAATATGTTTAACCAAATTGACACCGACGGCAATGGCAATGCCCAAGGCCACCTTATTGTCAACTACGACTTTGTTGACTGTGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

146

Amino Acids

15.89

Weight (kDa)

4.64

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	113, 136, 219
AclWI	GGATC	3 cut(s)	84, 297, 321
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	186
AjiI	CACGTC	1 cut(s)	346
AlwI	GGATC	3 cut(s)	84, 297, 321
AoxI	GGCC	4 cut(s)	8, 220, 229, 394
ApeKI	GCWGC	3 cut(s)	115, 192, 321
AspLEI	GCGC	2 cut(s)	158, 192
AspS9I	GGNCC	2 cut(s)	221, 230
AsuHPI	GGTGA	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	127, 204, 333
BceAI	ACGGC	1 cut(s)	391
BfaI	CTAG	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	228
BisI	GCNGC	4 cut(s)	116, 193, 220, 322
BlsI	GCNGC	4 cut(s)	117, 194, 221, 323
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	221, 230
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	157, 235
BmuI	ACTGGG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	2 cut(s)	385, 391
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	385, 391
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	127, 204, 333
BsgI	GTGCAG	1 cut(s)	340
BshFI	GGCC	4 cut(s)	10, 222, 231, 396
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	81, 143
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	81, 143
BsnI	GGCC	4 cut(s)	10, 222, 231, 396
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	89, 172, 289, 313
BspACI	CCGC	3 cut(s)	113, 136, 219
BspANI	GGCC	4 cut(s)	10, 222, 231, 396
BspPI	GGATC	3 cut(s)	84, 297, 321
BsrDI	GCAATG	2 cut(s)	385, 391
BsrGI	TGTACA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	4 cut(s)	89, 172, 289, 313
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	301, 428
BstAUI	TGTACA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	158, 192
BstKTI	GATC	4 cut(s)	92, 175, 292, 316
BstMBI	GATC	4 cut(s)	89, 172, 289, 313
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 155, 201, 228, 330
BstV1I	GCAGC	3 cut(s)	127, 204, 333
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	4 cut(s)	10, 222, 231, 396
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	306, 323
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	2 cut(s)	158, 192
Cfr13I	GGNCC	2 cut(s)	221, 230
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	4 cut(s)	12, 43, 162, 186
CviJI	RGCY	8 cut(s)	10, 140, 178, 204, 222, 231, 333, 396
CviKI_1	RGCY	8 cut(s)	10, 140, 178, 204, 222, 231, 333, 396
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	4 cut(s)	91, 174, 291, 315
DpnII	GATC	4 cut(s)	89, 172, 289, 313
Eco130I	CCWWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	4 cut(s)	15, 46, 165, 189
FaiI	YATR	7 cut(s)	13, 44, 97, 163, 187, 201, 353
FalI	AAGNNNNNCTT	4 cut(s)	248, 280, 384, 416
FaqI	GGGAC	2 cut(s)	81, 143
FatI	CATG	4 cut(s)	11, 42, 161, 185
FauI	CCCGC	2 cut(s)	120, 129
Fnu4HI	GCNGC	4 cut(s)	116, 193, 220, 322
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	4 cut(s)	116, 193, 220, 322
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	157, 191
GluI	GCNGC	4 cut(s)	116, 193, 220, 322
HaeIII	GGCC	4 cut(s)	10, 222, 231, 396
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	158, 192
Hin1II	CATG	4 cut(s)	15, 46, 165, 189
Hin6I	GCGC	2 cut(s)	156, 190
HinP1I	GCGC	2 cut(s)	156, 190
HincII	GTYRAC	2 cut(s)	409, 424
HindII	GTYRAC	2 cut(s)	409, 424
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	409, 424
Hpy188I	TCNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	409, 424
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	301, 428
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	3 cut(s)	42, 185, 321
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 155, 201, 228, 330
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	15, 46, 165, 189
HspAI	GCGC	2 cut(s)	156, 190
Kzo9I	GATC	4 cut(s)	89, 172, 289, 313
LpnPI	CCDG	7 cut(s)	35, 37, 112, 190, 237, 250, 270
Lsp1109I	GCAGC	3 cut(s)	127, 204, 333
LweI	GCATC	2 cut(s)	157, 235
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	3 cut(s)	268, 295, 431
MalI	GATC	4 cut(s)	91, 174, 291, 315
MboI	GATC	4 cut(s)	89, 172, 289, 313
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	1 cut(s)	363
MnlI	CCTC	3 cut(s)	272, 297, 323
MseI	TTAA	1 cut(s)	357
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	146, 155, 201, 228, 330
NdeII	GATC	4 cut(s)	89, 172, 289, 313
NlaIII	CATG	4 cut(s)	15, 46, 165, 189
NmuCI	GTSAC	2 cut(s)	268, 431
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	117, 194, 221, 323
PspPI	GGNCC	2 cut(s)	221, 230
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	116, 193, 220, 322
Sau3AI	GATC	4 cut(s)	89, 172, 289, 313
Sau96I	GGNCC	2 cut(s)	221, 230
SetI	ASST	2 cut(s)	348, 402
SfaNI	GCATC	2 cut(s)	157, 235
SfiI	GGCCNNNNNGGCC	1 cut(s)	228
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	113, 136, 219
SspMI	CTAG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	301, 428
TaiI	ACGT	1 cut(s)	348
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	306, 323
TseFI	GTSAC	2 cut(s)	268, 431
TseI	GCWGC	3 cut(s)	115, 192, 321
Tsp45I	GTSAC	2 cut(s)	268, 431
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	306, 323
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.