Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

74584736 .. 74590722

Gene Structure 5987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0630900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCTAAGTTAGCCATGGATGTTCCTCCCAAGGGTGGGTTTAGCTTTGATCTCTGTAAGCGAAATGCGATGCTGGCAAAGGACGGGGTTCAGCTACCTCCTTTTAGAAAGACTGGAACCACCATTGTGGGTTTGATTTATCAGGATGGTGTAGTCCTGGGAGCAGATACAAGGGCTACTGAAGGACCCATTGTAGCTGATAAGAACTGCGAGAAGATCCATTACTTGGCTCCCAATATTTATTGCTGTGGTGCGGGAACTGCTGCTGACACTGAGGCAGTTACAGATATGGTAAGCGCACAGCTGCAGTTGCACCGTTACCATACCGGCAGGGAGTCAAGGGTTGTGACTGCCCTCACCTATCTCAAAAGACATCTTTTCAGTTACCAAGGTCATGTCTCGGCTGCATTGGTGCTGGGTGGTGTTGATTTCACCGGCCCTCATTTGCACACTATTTATCCGCATGGGTCGACTGACACACTCCCTTATGCCACTATGGGTTCCGGCTCACTTGCTGCAATGGCCATCTTCGAGTCCAAGTACAAAGAAGGCCTGACTAGAGATGAAGGGGTACAGCTTGTTACAGAGGCTATTTGCTCTGGTATATTCAACGACTTGGGAAGTGGTAGCAATGTCGATATCTGTGTAATAACCAAGGGCAACAAAGAATTCCTGCGGAACCATTTGCAGCCTAATCCTCGAACCTATGTCAGCCCCAAAGAATACACATTCACCAAGAAGACCGAGGTTCTGTTAACCAAGATAACACCATTGAAGGAGAAGGTAGAAGTTATAGAAGTAGGAGGAGACGCCATGGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045087 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080027 GO:0090304 GO:0090305 GO:0090501 GO:0097367 GO:0098542 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin Chitin_bind_1

Protein Analysis

274

Amino Acids

29.73

Weight (kDa)

6.51

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	37 - 217	5.4e-50	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	3 cut(s)	254, 461, 676
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	2 cut(s)	542, 573
AfiI	CCNNNNNNNGG	4 cut(s)	32, 35, 36, 226
AgsI	TTSAA	2 cut(s)	610, 775
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	5 cut(s)	45, 94, 197, 304, 577
AluI	AGCT	5 cut(s)	45, 94, 197, 304, 577
Alw26I	GTCTC	2 cut(s)	403, 801
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	3 cut(s)	436, 522, 550
ApeKI	GCWGC	5 cut(s)	263, 304, 404, 515, 688
ApoI	RAATTY	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	185, 437
AsuHPI	GGTGA	3 cut(s)	349, 424, 724
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	5 cut(s)	250, 291, 391, 502, 700
BccI	CCATC	2 cut(s)	140, 533
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	403, 801
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
BlsI	GCNGC	5 cut(s)	265, 306, 406, 517, 690
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	185, 437
BmiI	GGNNCC	5 cut(s)	118, 187, 231, 502, 680
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	746
BsaHI	GRCGYC	1 cut(s)	810
BsaJI	CCNNGG	7 cut(s)	15, 30, 157, 388, 654, 744, 813
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 35, 36, 226
Bse118I	RCCGGY	2 cut(s)	326, 434
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	525, 637
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	7 cut(s)	15, 30, 157, 388, 654, 744, 813
BseGI	GGATG	2 cut(s)	25, 151
BseLI	CCNNNNNNNGG	4 cut(s)	32, 35, 36, 226
BseMI	GCAATG	2 cut(s)	525, 637
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	819
BseXI	GCAGC	5 cut(s)	250, 291, 391, 502, 700
BseYI	CCCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	438, 524, 552
BsiSI	CCGG	3 cut(s)	327, 435, 504
BslI	CCNNNNNNNGG	4 cut(s)	32, 35, 36, 226
BsmAI	GTCTC	2 cut(s)	403, 801
BsmBI	CGTCTC	1 cut(s)	801
BsnI	GGCC	3 cut(s)	438, 524, 552
Bsp143I	GATC	2 cut(s)	49, 216
Bsp19I	CCATGG	2 cut(s)	15, 813
BspACI	CCGC	3 cut(s)	254, 461, 676
BspANI	GGCC	3 cut(s)	438, 524, 552
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	5 cut(s)	118, 187, 231, 502, 680
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	525, 637
BsrFI	RCCGGY	2 cut(s)	326, 434
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	2 cut(s)	326, 434
BssECI	CCNNGG	7 cut(s)	15, 30, 157, 388, 654, 744, 813
BssMI	GATC	2 cut(s)	49, 216
BssNI	GRCGYC	1 cut(s)	810
BssT1I	CCWWGG	5 cut(s)	15, 30, 388, 654, 813
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	810
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	6, 273
BstDSI	CCRYGG	2 cut(s)	15, 813
BstF5I	GGATG	2 cut(s)	25, 151
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	52, 219
BstMAI	GTCTC	2 cut(s)	403, 801
BstMBI	GATC	2 cut(s)	49, 216
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 260, 310, 521
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	250, 291, 391, 502, 700
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	438, 524, 552
BtgI	CCRYGG	2 cut(s)	15, 813
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	25, 151
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	2 cut(s)	326, 434
Cfr13I	GGNCC	2 cut(s)	185, 437
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	541, 572
CviAII	CATG	4 cut(s)	16, 395, 464, 814
CviQI	GTAC	2 cut(s)	541, 572
DdeI	CTNAG	2 cut(s)	6, 273
DpnI	GATC	2 cut(s)	51, 218
DpnII	GATC	2 cut(s)	49, 216
EaeI	YGGCCR	1 cut(s)	522
Eco130I	CCWWGG	5 cut(s)	15, 30, 388, 654, 813
Eco147I	AGGCCT	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	5 cut(s)	15, 30, 388, 654, 813
ErhI	CCWWGG	5 cut(s)	15, 30, 388, 654, 813
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	4 cut(s)	19, 398, 467, 817
FatI	CATG	4 cut(s)	15, 394, 463, 813
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
FokI	GGATG	2 cut(s)	32, 158
Fsp4HI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	438, 524, 552
HapII	CCGG	3 cut(s)	327, 435, 504
HgaI	GACGC	1 cut(s)	818
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	4 cut(s)	19, 398, 467, 817
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	2 cut(s)	471, 756
HindII	GTYRAC	2 cut(s)	471, 756
HinfI	GANTC	2 cut(s)	335, 533
HpaI	GTTAAC	1 cut(s)	756
HpaII	CCGG	3 cut(s)	327, 435, 504
HphI	GGTGA	3 cut(s)	349, 424, 724
Hpy166II	GTNNAC	2 cut(s)	471, 756
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	471, 756
HpyAV	CCTTC	5 cut(s)	176, 542, 560, 769, 775
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	6 cut(s)	307, 313, 407, 448, 518, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 260, 310, 521
HpyF3I	CTNAG	2 cut(s)	6, 273
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	4 cut(s)	19, 398, 467, 817
HspAI	GCGC	1 cut(s)	297
KspAI	GTTAAC	1 cut(s)	756
Kzo9I	GATC	2 cut(s)	49, 216
LmnI	GCTCC	2 cut(s)	161, 235
Lsp1109I	GCAGC	5 cut(s)	250, 291, 391, 502, 700
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	5 cut(s)	280, 317, 346, 383, 580
MalI	GATC	2 cut(s)	51, 218
MboI	GATC	2 cut(s)	49, 216
MboII	GAAGA	3 cut(s)	226, 520, 751
MflI	RGATCY	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	1 cut(s)	668
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	2 cut(s)	344, 542
MnlI	CCTC	9 cut(s)	36, 108, 268, 365, 450, 580, 708, 739, 797
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	755
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	3 cut(s)	327, 435, 504
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	4 cut(s)	74, 260, 310, 521
NcoI	CCATGG	2 cut(s)	15, 813
NdeII	GATC	2 cut(s)	49, 216
NlaIII	CATG	4 cut(s)	19, 398, 467, 817
NlaIV	GGNNCC	5 cut(s)	118, 187, 231, 502, 680
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	552
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	265, 306, 406, 517, 690
PleI	GAGTC	2 cut(s)	343, 541
PpsI	GAGTC	2 cut(s)	343, 541
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	5 cut(s)	118, 187, 231, 502, 680
PspPI	GGNCC	2 cut(s)	185, 437
PspPPI	RGGWCCY	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	542, 573
RsaNI	GTAC	2 cut(s)	541, 572
RseI	CAYNNNNRTG	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	755
SatI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
Sau3AI	GATC	2 cut(s)	49, 216
Sau96I	GGNCC	2 cut(s)	185, 437
SchI	GAGTC	2 cut(s)	344, 542
ScrFI	CCNGG	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	668
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	3 cut(s)	254, 461, 676
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	558
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	5 cut(s)	15, 30, 388, 654, 813
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	4 cut(s)	470, 531, 636, 700
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	1 cut(s)	668
TatI	WGTACW	1 cut(s)	540
Tru1I	TTAA	1 cut(s)	755
Tru9I	TTAA	1 cut(s)	755
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	5 cut(s)	263, 304, 404, 515, 688
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.