Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

3453203 .. 3454319

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCGGAAAACAAAGCGTCGTGTTCTTGGTGATTTTGTGTGCCGCAATGGCCGGAAGTGCTTCAGCTCAAAGTGCTACTAACGTGAGAGCCACGTACCACCTCTACAACCCGCAGGACAACAACTGGGATTTGCGAGCCGTGAGTGCCTTCTGCTCGACGTGGGACGCCGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCGCTTTCTGTGGCCCGGCAGGTCCGACCGGACAAGACGCCTGTGGAAAATGTCTGCTAGTGACAAACACCGCGACCGGAACTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAACGTGTTCAACCAGATAGACACGGACGGAAGCGGGTATCAGGCGGGACACCTTACAGTTAACTACGACTTTGTCGACTGTGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

146

Amino Acids

15.44

Weight (kDa)

4.55

Isoelectric Point (pI)

19.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Barwin	PF00967	25 - 143	3.3e-63	Barwin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AccI	GTMKAC	2 cut(s)	312, 423
AccII	CGCG	1 cut(s)	281
AciI	CCGC	6 cut(s)	45, 113, 210, 279, 381, 392
AcoI	YGGCCR	2 cut(s)	3, 51
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	2 cut(s)	168, 246
AfaI	GTAC	2 cut(s)	98, 200
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	358
AjiI	CACGTC	2 cut(s)	162, 346
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AoxI	GGCC	3 cut(s)	3, 51, 220
ApeKI	GCWGC	2 cut(s)	192, 321
Asp700I	GAANNNNTTC	2 cut(s)	61, 353
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	207, 221, 230
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	43, 313
AvaII	GGWCC	2 cut(s)	207, 230
BbvI	GCAGC	2 cut(s)	204, 333
BccI	CCATC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	45, 193, 322
BlsI	GCNGC	3 cut(s)	46, 194, 323
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	207, 230
BmgBI	CACGTC	2 cut(s)	162, 346
BmgT120I	GGNCC	3 cut(s)	207, 221, 230
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	96
BsaHI	GRCGYC	2 cut(s)	168, 246
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	2 cut(s)	236, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	131, 316
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	131, 316
BseXI	GCAGC	2 cut(s)	204, 333
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	2 cut(s)	237, 285
BshFI	GGCC	3 cut(s)	5, 53, 222
BsiEI	CGRYCG	2 cut(s)	237, 285
BsiSI	CCGG	5 cut(s)	6, 54, 224, 237, 285
BslFI	GGGAC	2 cut(s)	179, 408
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	179, 408
BsnI	GGCC	3 cut(s)	5, 53, 222
BspACI	CCGC	6 cut(s)	45, 113, 210, 279, 381, 392
BspANI	GGCC	3 cut(s)	5, 53, 222
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	131, 316
BssECI	CCNNGG	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	168, 246
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	301, 406, 428
BstACI	GRCGYC	2 cut(s)	168, 246
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	192
BstMCI	CGRYCG	2 cut(s)	237, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 59, 74, 146
BstSCI	CCNGG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	204, 333
BsuRI	GGCC	3 cut(s)	5, 53, 222
BtrI	CACGTC	2 cut(s)	162, 346
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	207, 221, 230
CseI	GACGC	3 cut(s)	7, 176, 254
Csp6I	GTAC	2 cut(s)	97, 199
CviJI	RGCY	8 cut(s)	5, 53, 68, 92, 140, 178, 222, 334
CviKI_1	RGCY	8 cut(s)	5, 53, 68, 92, 140, 178, 222, 334
CviQI	GTAC	2 cut(s)	97, 199
DdeI	CTNAG	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	3, 51
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	207, 230
Eco57I	CTGAAG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaqI	GGGAC	2 cut(s)	179, 408
FauI	CCCGC	3 cut(s)	120, 374, 385
FblI	GTMKAC	2 cut(s)	312, 423
Fnu4HI	GCNGC	3 cut(s)	45, 193, 322
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	45, 193, 322
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	45, 193, 322
HaeIII	GGCC	3 cut(s)	5, 53, 222
HapII	CCGG	5 cut(s)	6, 54, 224, 237, 285
HgaI	GACGC	3 cut(s)	7, 176, 254
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	2 cut(s)	168, 246
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	3 cut(s)	313, 409, 424
HindII	GTYRAC	3 cut(s)	313, 409, 424
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	5 cut(s)	6, 54, 224, 237, 285
HphI	GGTGA	2 cut(s)	43, 313
Hpy166II	GTNNAC	4 cut(s)	313, 349, 409, 424
Hpy188I	TCNGA	1 cut(s)	234
Hpy8I	GTNNAC	4 cut(s)	313, 349, 409, 424
Hpy99I	CGWCG	3 cut(s)	23, 163, 301
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	301, 406, 428
HpyCH4IV	ACGT	5 cut(s)	84, 95, 161, 345, 351
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 59, 74, 146
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	5 cut(s)	84, 95, 161, 345, 351
Hsp92I	GRCGYC	2 cut(s)	168, 246
HspAI	GCGC	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	204, 333
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	5 cut(s)	84, 95, 161, 345, 351
MaeIII	GTNAC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	113, 297, 323
MroXI	GAANNNNTTC	2 cut(s)	61, 353
MseI	TTAA	1 cut(s)	408
MspI	CCGG	5 cut(s)	6, 54, 224, 237, 285
MspR9I	CCNGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	50, 59, 74, 146
NciI	CCSGG	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	61, 353
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	46, 194, 323
Ppu21I	YACGTR	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	207, 221, 230
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	2 cut(s)	98, 200
RsaNI	GTAC	2 cut(s)	97, 199
SalI	GTCGAC	2 cut(s)	311, 422
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	3 cut(s)	45, 193, 322
Sau96I	GGNCC	3 cut(s)	207, 221, 230
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	9 cut(s)	70, 87, 98, 105, 164, 232, 348, 354, 402
SinI	GGWCC	2 cut(s)	207, 230
SsiI	CCGC	6 cut(s)	45, 113, 210, 279, 381, 392
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	301, 406, 428
TaiI	ACGT	5 cut(s)	87, 98, 164, 348, 354
TaqI	TCGA	3 cut(s)	158, 312, 423
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	192, 321
Tsp45I	GTSAC	1 cut(s)	268
TspGWI	ACGGA	4 cut(s)	216, 342, 386, 390
TspRI	CASTG	1 cut(s)	323
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	207, 230
XmiI	GTMKAC	2 cut(s)	312, 423
XmnI	GAANNNNTTC	2 cut(s)	61, 353
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.