pycom04g19860

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000898
Physical Location & Seq
Forward (+)
21491331 .. 21491872
542 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g19860.2

Sequence Viewer

Length: 447 bp
ATGGCCGGGAAGATCACAGCAAGCTCTGTGCTGTTTGTTTCGATCATGATCTGTGGTTTGGTCGGCAGTGCATGGGGACAAAGTGCGACGAATGTGAGAGCCACATACCACCTCTACAATCCACAGCAAAACAATTACGACTTGCGGGCAGTAAGTGCCTACTGCTCAACATGGGATGCCGATAAATCCCTCGAATGGCGCAGCAAATATGGATGGACTGCCTTTTGCGGACCTGCTGGCCCTACTGGGCAAGCCGCATGCGGAAGGTGCCTCTCGGTGACAAACACTCGGACTGGAGCTCAAGCAACGGTGAGAATTGTTGATCAGTGCAGCAACGGAGGGTTGGACTTGGACGTGAATGTTTTTAACCAAATTGACACCGACGGCAATGGTTACGCACAAGGCCACCTTATCGTCAACTACAACTTTGTCGACTGCGGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

149

Amino Acids

15.86

Weight (kDa)

5.5

Isoelectric Point (pI)

11.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 432
AciI CCGC 5 cut(s) 145, 228, 255, 261, 438
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 195
AjiI CACGTC 1 cut(s) 355
AluBI AGCT 2 cut(s) 24, 299
AluI AGCT 2 cut(s) 24, 299
Alw21I GWGCWC 1 cut(s) 301
AoxI GGCC 3 cut(s) 3, 238, 403
ApeKI GCWGC 2 cut(s) 201, 330
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 230, 239
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 289, 322
AvaII GGWCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 213, 342
BccI CCATC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 400
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 7
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 4 cut(s) 202, 255, 331, 439
BlsI GCNGC 4 cut(s) 203, 256, 332, 440
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 230, 239
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 250, 298
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 47
BseGI GGATG 2 cut(s) 181, 218
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 2 cut(s) 250, 298
BseXI GCAGC 2 cut(s) 213, 342
BsgI GTGCAG 1 cut(s) 349
BshFI GGCC 3 cut(s) 5, 240, 405
BshNI GGYRCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 3 cut(s) 5, 240, 405
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 4 cut(s) 12, 42, 48, 322
BspACI CCGC 5 cut(s) 145, 228, 255, 261, 438
BspANI GGCC 3 cut(s) 5, 240, 405
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 250, 298
BssMI GATC 4 cut(s) 12, 42, 48, 322
Bst4CI ACNGT 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 5 cut(s) 22, 147, 238, 252, 259
BstF5I GGATG 2 cut(s) 181, 218
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 4 cut(s) 15, 45, 51, 325
BstMBI GATC 4 cut(s) 12, 42, 48, 322
BstMWI GCNNNNNNNGC 2 cut(s) 155, 267
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 213, 342
BsuRI GGCC 3 cut(s) 5, 240, 405
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 181, 218
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 73, 332
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 5 cut(s) 22, 147, 238, 252, 259
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 230, 239
CviAII CATG 4 cut(s) 46, 72, 171, 258
CviJI RGCY 7 cut(s) 5, 24, 101, 240, 254, 299, 405
CviKI_1 RGCY 7 cut(s) 5, 24, 101, 240, 254, 299, 405
DpnI GATC 4 cut(s) 14, 44, 50, 324
DpnII GATC 4 cut(s) 12, 42, 48, 322
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 4 cut(s) 49, 75, 174, 261
FaiI YATR 6 cut(s) 47, 73, 106, 172, 210, 259
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 1 cut(s) 90
FatI CATG 4 cut(s) 45, 71, 170, 257
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 202, 255, 331, 439
FokI GGATG 2 cut(s) 188, 225
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 202, 255, 331, 439
GlaI GCGC 1 cut(s) 200
GluI GCNGC 4 cut(s) 202, 255, 331, 439
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 3 cut(s) 5, 240, 405
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 201
Hin1II CATG 4 cut(s) 49, 75, 174, 261
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 2 cut(s) 418, 433
HindII GTYRAC 2 cut(s) 418, 433
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 289, 322
Hpy166II GTNNAC 2 cut(s) 418, 433
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 2 cut(s) 418, 433
Hpy99I CGWCG 2 cut(s) 91, 386
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 71, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 267
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 4 cut(s) 49, 75, 174, 261
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 12, 42, 48, 322
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 5 cut(s) 19, 222, 231, 246, 279
Lsp1109I GCAGC 2 cut(s) 213, 342
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 277, 392
MalI GATC 4 cut(s) 14, 44, 50, 324
MboI GATC 4 cut(s) 12, 42, 48, 322
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 3 cut(s) 133, 315, 372
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 4 cut(s) 122, 200, 281, 332
MseI TTAA 1 cut(s) 366
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 155, 267
NciI CCSGG 1 cut(s) 7
NdeII GATC 4 cut(s) 12, 42, 48, 322
NlaIII CATG 4 cut(s) 49, 75, 174, 261
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PagI TCATGA 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PkrI GCNGC 4 cut(s) 203, 256, 332, 440
Psp124BI GAGCTC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 230, 239
SacI GAGCTC 1 cut(s) 301
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 4 cut(s) 202, 255, 331, 439
Sau3AI GATC 4 cut(s) 12, 42, 48, 322
Sau96I GGNCC 2 cut(s) 230, 239
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 301
SetI ASST 7 cut(s) 26, 114, 235, 269, 301, 357, 411
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
SphI GCATGC 1 cut(s) 261
Sse9I AATT 3 cut(s) 133, 315, 372
SsiI CCGC 5 cut(s) 145, 228, 255, 261, 438
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 357
TaqI TCGA 3 cut(s) 41, 192, 432
TasI AATT 3 cut(s) 133, 315, 372
TauI GCSGC 2 cut(s) 257, 441
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 73, 332
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 201, 330
Tsp45I GTSAC 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 2 cut(s) 73, 332
VpaK11BI GGWCC 1 cut(s) 230
XceI RCATGY 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.