RchiOBHm_Chr3g0450841

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000898
Physical Location & Seq
Reverse (-)
2223075 .. 2223548
474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41815

Sequence Viewer

Length: 474 bp
ATGCGTCGTGTTTTTGGTGATGGTGTGTGCGGCGATGGCCGGAAGTGCTTCTGCGCAAAGTGCTACTATCGTGACTTCGTGAGAGCCACGTACCACCTTTACAATCCGCAGGACAACAACTGGGACTTGCGAGCCGTAAGTGCCTACTGCGCGAAGTGGGATGCCGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCACCTTCTGTGGCCCCGCAGGCCCGACCGGACAAGAGGCCTGCGGAAAGTGCCTGCTAGTGACGAACACCGCGACAGGAGCTCAGGCGACGGTGAGGATTGTCGATCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAATGTGTTTAACCAGATAGACACGGACGGAAGTGGGTATCAGCAAGGACACCATACAGTCAACTATACGACTTTGTCGACTGTGAGGACTAAACTAATTAAACCCTTGCTAGCTTCCATCATGAATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

157

Amino Acids

17.51

Weight (kDa)

8.36

Isoelectric Point (pI)

12.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 27 - 138 1.8e-58 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 55
AccI GTMKAC 1 cut(s) 419
AccII CGCG 2 cut(s) 152, 275
AciI CCGC 5 cut(s) 30, 107, 219, 246, 273
AcoI YGGCCR 1 cut(s) 37
AfaI GTAC 2 cut(s) 92, 194
AfiI CCNNNNNNNGG 1 cut(s) 180
AjiI CACGTC 1 cut(s) 340
AluBI AGCT 2 cut(s) 284, 455
AluI AGCT 2 cut(s) 284, 455
Alw21I GWGCWC 1 cut(s) 286
AoxI GGCC 4 cut(s) 37, 214, 223, 240
ApeKI GCWGC 2 cut(s) 186, 315
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 3 cut(s) 56, 152, 186
AspS9I GGNCC 3 cut(s) 201, 215, 224
AsuHPI GGTGA 2 cut(s) 29, 307
AsuNHI GCTAGC 1 cut(s) 451
AvaII GGWCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 198, 327
BccI CCATC 4 cut(s) 14, 29, 192, 467
BceAI ACGGC 1 cut(s) 119
BfaI CTAG 2 cut(s) 260, 452
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 3 cut(s) 31, 187, 316
BlsI GCNGC 3 cut(s) 32, 188, 317
Bme18I GGWCC 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 201, 215, 224
BmiI GGNNCC 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 166, 203
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 198, 327
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 2 cut(s) 152, 275
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 4 cut(s) 39, 216, 225, 242
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 2 cut(s) 40, 231
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 4 cut(s) 39, 216, 225, 242
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 5 cut(s) 30, 107, 219, 246, 273
BspANI GGCC 4 cut(s) 39, 216, 225, 242
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 2 cut(s) 152, 275
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 455
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 295, 400, 424
BstBAI YACGTR 1 cut(s) 90
BstC8I GCNNGC 5 cut(s) 132, 223, 244, 257, 453
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 166, 203
BstFNI CGCG 2 cut(s) 152, 275
BstHHI GCGC 3 cut(s) 56, 152, 186
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 8 cut(s) 36, 45, 60, 140, 149, 222, 252, 281
BstUI CGCG 2 cut(s) 152, 275
BstV1I GCAGC 2 cut(s) 198, 327
BsuRI GGCC 4 cut(s) 39, 216, 225, 242
BtgZI GCGATG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 166, 203
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 5 cut(s) 132, 223, 244, 257, 453
CciI TCATGA 1 cut(s) 462
CfoI GCGC 3 cut(s) 56, 152, 186
Cfr13I GGNCC 3 cut(s) 201, 215, 224
Csp6I GTAC 2 cut(s) 91, 193
CviAII CATG 1 cut(s) 463
CviQI GTAC 2 cut(s) 91, 193
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 466
FaiI YATR 3 cut(s) 396, 408, 464
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 462
FauI CCCGC 1 cut(s) 226
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 3 cut(s) 31, 187, 316
FokI GGATG 2 cut(s) 173, 210
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 31, 187, 316
FspBI CTAG 2 cut(s) 260, 452
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 3 cut(s) 55, 151, 185
GluI GCNGC 3 cut(s) 31, 187, 316
HaeIII GGCC 4 cut(s) 39, 216, 225, 242
HapII CCGG 2 cut(s) 40, 231
HhaI GCGC 3 cut(s) 56, 152, 186
Hin1II CATG 1 cut(s) 466
Hin6I GCGC 3 cut(s) 54, 150, 184
HinP1I GCGC 3 cut(s) 54, 150, 184
HincII GTYRAC 2 cut(s) 403, 420
HindII GTYRAC 2 cut(s) 403, 420
HpaII CCGG 2 cut(s) 40, 231
HphI GGTGA 2 cut(s) 29, 307
Hpy166II GTNNAC 2 cut(s) 403, 420
Hpy188III TCNNGA 3 cut(s) 71, 79, 463
Hpy8I GTNNAC 2 cut(s) 403, 420
Hpy99I CGWCG 2 cut(s) 9, 295
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 295, 400, 424
HpyCH4IV ACGT 2 cut(s) 89, 339
HpyCH4V TGCA 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 45, 60, 140, 149, 222, 252, 281
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 89, 339
Hsp92II CATG 1 cut(s) 466
HspAI GCGC 3 cut(s) 54, 150, 184
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 2 cut(s) 198, 327
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 260, 452
MaeII ACGT 2 cut(s) 89, 339
MaeIII GTNAC 2 cut(s) 71, 262
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 438, 466
MnlI CCTC 4 cut(s) 232, 291, 317, 420
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 351, 441
MspI CCGG 2 cut(s) 40, 231
MvnI CGCG 2 cut(s) 152, 275
MwoI GCNNNNNNNGC 8 cut(s) 36, 45, 60, 140, 149, 222, 252, 281
NdeII GATC 1 cut(s) 307
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 71, 262
NsbI TGCGCA 1 cut(s) 55
PagI TCATGA 1 cut(s) 462
PceI AGGCCT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 2 cut(s) 272, 416
PdmI GAANNNNTTC 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 415
PkrI GCNGC 3 cut(s) 32, 188, 317
Ppu21I YACGTR 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 3 cut(s) 201, 215, 224
PsyI GACNNNGTC 1 cut(s) 415
RsaI GTAC 2 cut(s) 92, 194
RsaNI GTAC 2 cut(s) 91, 193
SacI GAGCTC 1 cut(s) 286
SalI GTCGAC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 351, 441
SatI GCNGC 3 cut(s) 31, 187, 316
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 3 cut(s) 201, 215, 224
SduI GDGCHC 1 cut(s) 286
SetI ASST 6 cut(s) 92, 99, 209, 286, 342, 457
SfaNI GCATC 1 cut(s) 151
SfiI GGCCNNNNNGGCC 1 cut(s) 222
SinI GGWCC 1 cut(s) 201
Sse9I AATT 2 cut(s) 438, 466
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 5 cut(s) 30, 107, 219, 246, 273
SspMI CTAG 2 cut(s) 260, 452
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 1 cut(s) 242
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 295, 400, 424
TaiI ACGT 2 cut(s) 92, 342
TaqI TCGA 2 cut(s) 306, 419
TasI AATT 2 cut(s) 438, 466
TauI GCSGC 1 cut(s) 33
Tru1I TTAA 2 cut(s) 351, 441
Tru9I TTAA 2 cut(s) 351, 441
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 2 cut(s) 71, 262
TseI GCWGC 2 cut(s) 186, 315
Tsp45I GTSAC 2 cut(s) 71, 262
TspGWI ACGGA 4 cut(s) 210, 336, 380, 384
TspRI CASTG 1 cut(s) 317
Tth111I GACNNNGTC 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 260, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.