Rroxscaffold_6G00428510

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000898
Physical Location & Seq
Reverse (-)
48917101 .. 48917603
503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428510.1

Sequence Viewer

Length: 429 bp
ATGGCCGGGAAGATGAGCATTGTCTTGTTACTTATCTTCTGTGCAATAGTGGGAAGTGCTTCTGCTACTTCTAATGTGAGAGCCACATACCACCTCTACAATCCGCAAGATAACAACTGGGACTTGCTTGTAGTAGGAGCCTTCTGCGCAACATTTGTTGCCAATCAGCCCTTCGAATGGCGCAGCAGGTATGGATGGACCGCCTTCTGCGGACCTGAAGGCCCTAGAGGAGCAGAGGCCTGCGGAAAATGCCTACTGGTGACAAACATGGGGACAGGAGCTCAGGAAACAGTGAGAATTATCGATCAATGCAGCAATGGAGGTTTGGATTTGGATGTGAATGTGTTTTCCCAGATAGACACTGATGGAAGAGGCTATGCACAAGGCGACCTTATTGTCAACTACGACTTTGTGGACTGCGGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

142

Amino Acids

15.32

Weight (kDa)

4.41

Isoelectric Point (pI)

21.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 23 - 140 1.8e-54 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc16I TGCGCA 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 5 cut(s) 104, 201, 210, 243, 420
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw21I GWGCWC 1 cut(s) 283
AoxI GGCC 3 cut(s) 3, 220, 237
ApeKI GCWGC 2 cut(s) 183, 312
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 2 cut(s) 149, 183
AspS9I GGNCC 3 cut(s) 198, 212, 221
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 2 cut(s) 198, 212
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 195, 324
BccI CCATC 2 cut(s) 189, 359
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 184, 313, 421
BlsI GCNGC 3 cut(s) 185, 314, 422
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 198, 212
BmgT120I GGNCC 3 cut(s) 198, 212, 221
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 7
Bsa29I ATCGAT 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 122, 261
Bse3DI GCAATG 1 cut(s) 322
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 2 cut(s) 200, 340
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 122, 261
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 195, 324
BshFI GGCC 3 cut(s) 5, 222, 239
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 2 cut(s) 134, 286
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 134, 286
BsnI GGCC 3 cut(s) 5, 222, 239
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 5 cut(s) 104, 201, 210, 243, 420
BspANI GGCC 3 cut(s) 5, 222, 239
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 2 cut(s) 122, 261
BssMI GATC 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 200, 340
BstHHI GCGC 2 cut(s) 149, 183
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 146, 249
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 195, 324
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 3 cut(s) 5, 222, 239
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 2 cut(s) 200, 340
BtsIMutI CAGTG 2 cut(s) 297, 360
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 241
CfoI GCGC 2 cut(s) 149, 183
Cfr13I GGNCC 3 cut(s) 198, 212, 221
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 1 cut(s) 268
CviJI RGCY 8 cut(s) 5, 83, 140, 169, 222, 239, 281, 375
CviKI_1 RGCY 8 cut(s) 5, 83, 140, 169, 222, 239, 281, 375
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 281
Eco147I AGGCCT 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 198, 212
Eco53kI GAGCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 1 cut(s) 271
FaiI YATR 4 cut(s) 88, 192, 269, 378
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 2 cut(s) 134, 286
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 184, 313, 421
FokI GGATG 2 cut(s) 207, 347
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 184, 313, 421
FspBI CTAG 1 cut(s) 225
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 2 cut(s) 148, 182
GluI GCNGC 3 cut(s) 184, 313, 421
HaeIII GGCC 3 cut(s) 5, 222, 239
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 149, 183
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 147, 181
HinP1I GCGC 2 cut(s) 147, 181
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 400, 415
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 400, 415
HpyAV CCTTC 4 cut(s) 151, 181, 212, 214
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 44, 312, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 249
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 147, 181
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 3 cut(s) 137, 230, 278
LpnPI CCDG 9 cut(s) 19, 103, 172, 228, 242, 253, 261, 269, 365
Lsp1109I GCAGC 2 cut(s) 195, 324
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 27, 259
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 22, 28, 381
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 297
MnlI CCTC 5 cut(s) 104, 221, 229, 314, 365
MroXI GAANNNNTTC 1 cut(s) 58
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 146, 249
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 148
NspV TTCGAA 1 cut(s) 174
PceI AGGCCT 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 58
PkrI GCNGC 3 cut(s) 185, 314, 422
Psp124BI GAGCTC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 198, 212, 221
SacI GAGCTC 1 cut(s) 283
SatI GCNGC 3 cut(s) 184, 313, 421
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 3 cut(s) 198, 212, 221
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 283
SetI ASST 6 cut(s) 96, 191, 217, 283, 325, 393
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 2 cut(s) 198, 212
Sse9I AATT 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 5 cut(s) 104, 201, 210, 243, 420
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 283
StuI AGGCCT 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 174, 303
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 423
TscAI CASTG 2 cut(s) 297, 367
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 183, 312
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 2 cut(s) 297, 367
VpaK11BI GGWCC 2 cut(s) 198, 212
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.