Rh3DG032400

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000898
Physical Location & Seq
Reverse (-)
2192904 .. 2197086
4183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG032400.1

Sequence Viewer

Length: 438 bp
ATGGCCGGAAAAAAATGCGTCGTGTTTTTGGTGATGGTGTGTGCCGCGATGGCCGGAATTGCTTCTGCACAAAGTGCTACTAACGTGAGAGCCACGTACCACCTCTACAATCCGCAGGACAACAACTGGGACTTGCGAGTCGTGAGTGCCTACTGCGCGACGTGGGATGCCGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCGCCTTCTGTGGCCCCCAGGGCCCGACCGGACAAGAGGCCTGTGGAAAGTGCCTCCGAGTGACGAACACCGCGACAGGAGCTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTTAATGTGTTTAACCAGATAGACACGAACGGAATTGGGTATCAGCAAGGACATCTTACAGTCAACTACGACTTTGTTGACTGTGGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

145

Amino Acids

15.68

Weight (kDa)

5.17

Isoelectric Point (pI)

12.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 25 - 143 1.4e-65 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 312
AccII CGCG 3 cut(s) 47, 158, 281
AciI CCGC 4 cut(s) 45, 113, 210, 279
AcoI YGGCCR 2 cut(s) 3, 51
AdeI CACNNNGTG 1 cut(s) 74
AfaI GTAC 2 cut(s) 98, 200
AfiI CCNNNNNNNGG 1 cut(s) 186
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 292
AoxI GGCC 5 cut(s) 3, 51, 220, 229, 246
ApaI GGGCCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 192, 321
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 2 cut(s) 158, 192
AspS9I GGNCC 4 cut(s) 207, 221, 229, 230
AsuHPI GGTGA 2 cut(s) 43, 313
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 233, 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 204, 333
BccI CCATC 3 cut(s) 28, 43, 198
BciT130I CCWGG 1 cut(s) 227
BglI GCCNNNNNGGC 2 cut(s) 50, 228
BisI GCNGC 3 cut(s) 45, 193, 322
BlsI GCNGC 3 cut(s) 46, 194, 323
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 207, 221, 229, 230
BmiI GGNNCC 2 cut(s) 223, 231
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 180, 225, 226
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 131, 316
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 180, 225, 226
BseGI GGATG 2 cut(s) 172, 209
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 131, 316
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 2 cut(s) 204, 333
BsgI GTGCAG 2 cut(s) 51, 340
Bsh1236I CGCG 3 cut(s) 47, 158, 281
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 5, 53, 222, 231, 248
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 3 cut(s) 6, 54, 237
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 5 cut(s) 5, 53, 222, 231, 248
Bsp120I GGGCCC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 233, 292
BspACI CCGC 4 cut(s) 45, 113, 210, 279
BspANI GGCC 5 cut(s) 5, 53, 222, 231, 248
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 3 cut(s) 47, 158, 281
BspLI GGNNCC 2 cut(s) 223, 231
BsrI ACTGG 2 cut(s) 131, 316
BssECI CCNNGG 3 cut(s) 180, 225, 226
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 301, 406, 428
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 172, 209
BstFNI CGCG 3 cut(s) 47, 158, 281
BstHHI GCGC 2 cut(s) 158, 192
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 6 cut(s) 50, 59, 74, 155, 228, 287
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 233
BstUI CGCG 3 cut(s) 47, 158, 281
BstV1I GCAGC 2 cut(s) 204, 333
BsuRI GGCC 5 cut(s) 5, 53, 222, 231, 248
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 172, 209
BtsIMutI CAGTG 1 cut(s) 323
CfoI GCGC 2 cut(s) 158, 192
Cfr13I GGNCC 4 cut(s) 207, 221, 229, 230
CseI GACGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 97, 199
CviJI RGCY 9 cut(s) 5, 53, 92, 178, 222, 231, 248, 290, 334
CviKI_1 RGCY 9 cut(s) 5, 53, 92, 178, 222, 231, 248, 290, 334
CviQI GTAC 2 cut(s) 97, 199
DdeI CTNAG 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 74
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 3, 51
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 2 cut(s) 233, 292
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 2 cut(s) 233, 292
ErhI CCWWGG 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 45, 193, 322
FokI GGATG 2 cut(s) 179, 216
FriOI GRGCYC 2 cut(s) 233, 292
Fsp4HI GCNGC 3 cut(s) 45, 193, 322
GlaI GCGC 2 cut(s) 157, 191
GluI GCNGC 3 cut(s) 45, 193, 322
HaeIII GGCC 5 cut(s) 5, 53, 222, 231, 248
HapII CCGG 3 cut(s) 6, 54, 237
HgaI GACGC 1 cut(s) 7
HhaI GCGC 2 cut(s) 158, 192
Hin6I GCGC 2 cut(s) 156, 190
HinP1I GCGC 2 cut(s) 156, 190
HincII GTYRAC 3 cut(s) 313, 409, 424
HindII GTYRAC 3 cut(s) 313, 409, 424
HinfI GANTC 1 cut(s) 138
HpaII CCGG 3 cut(s) 6, 54, 237
HphI GGTGA 2 cut(s) 43, 313
Hpy166II GTNNAC 3 cut(s) 313, 409, 424
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 3 cut(s) 313, 409, 424
Hpy99I CGWCG 3 cut(s) 23, 163, 301
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 3 cut(s) 301, 406, 428
HpyCH4IV ACGT 4 cut(s) 84, 95, 161, 345
HpyCH4V TGCA 2 cut(s) 68, 321
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 59, 74, 155, 228, 287
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 4 cut(s) 84, 95, 161, 345
HspAI GCGC 2 cut(s) 156, 190
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 2 cut(s) 204, 333
LweI GCATC 1 cut(s) 157
MaeII ACGT 4 cut(s) 84, 95, 161, 345
MaeIII GTNAC 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 233, 292
MluCI AATT 2 cut(s) 57, 378
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 5 cut(s) 113, 238, 272, 297, 323
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 2 cut(s) 348, 357
MspI CCGG 3 cut(s) 6, 54, 237
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 3 cut(s) 47, 158, 281
MwoI GCNNNNNNNGC 6 cut(s) 50, 59, 74, 155, 228, 287
NlaIV GGNNCC 2 cut(s) 223, 231
NmuCI GTSAC 1 cut(s) 268
PasI CCCWGGG 1 cut(s) 226
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 46, 194, 323
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 223, 231
PspOMI GGGCCC 1 cut(s) 229
PspPI GGNCC 4 cut(s) 207, 221, 229, 230
RsaI GTAC 2 cut(s) 98, 200
RsaNI GTAC 2 cut(s) 97, 199
SacI GAGCTC 1 cut(s) 292
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 348, 357
SatI GCNGC 3 cut(s) 45, 193, 322
Sau96I GGNCC 4 cut(s) 207, 221, 229, 230
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 233, 292
SetI ASST 6 cut(s) 87, 98, 105, 164, 292, 348
SfaNI GCATC 1 cut(s) 157
SfiI GGCCNNNNNGGCC 1 cut(s) 228
SinI GGWCC 1 cut(s) 207
Sse9I AATT 2 cut(s) 57, 378
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 4 cut(s) 45, 113, 210, 279
SstI GAGCTC 1 cut(s) 292
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 3 cut(s) 301, 406, 428
TaiI ACGT 4 cut(s) 87, 98, 164, 348
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 57, 378
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 348, 357
Tru9I TTAA 2 cut(s) 348, 357
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 192, 321
Tsp45I GTSAC 1 cut(s) 268
TspGWI ACGGA 3 cut(s) 216, 342, 390
TspRI CASTG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.