Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

1605434 .. 1605952

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGCGGGAAGCTGAGCAATATAGTTTTGTTACTTATTGTCTGTGCAACAATGGGAAGAGCTGCTGCTCAAAGTGCTTCTAATGTGAGATCCACGTACCATCTATACAATCCGCAAGATAACAACTGGGACTTGCTAGCAGTAGGCGCCTTCTGCGCCACGTTCGATGAGGATCAACCCTTCGAGTGGCGCAGCAGATACGGATGGACTGCCTTCTGCGGACCCAATGGCCCTCAAGGAGCAGATGCTTGCGGAAAATGCTTACTGGTGACAAACATGGGGACAGGAGCTCAGGAAACAGTGAGAATTATAGATCAGTGCAACAATGGAGGTTTGGATTTGGATGTGAATGTGTTTAACGAGATAGACACTGATGGAAGAGGCTATGCACAAGGCGACCTTGTTGTCAACTACGACTTTGTAGACTGTGGCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

146

Amino Acids

15.66

Weight (kDa)

4.2

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Barwin	PF00967	25 - 143	4.7e-55	Barwin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	4 cut(s)	6, 113, 219, 252
AclWI	GGATC	2 cut(s)	84, 180
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	13, 62, 290
AluI	AGCT	3 cut(s)	13, 62, 290
Alw21I	GWGCWC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	84, 180
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	62, 65, 192
AspLEI	GCGC	3 cut(s)	149, 158, 192
AspS9I	GGNCC	2 cut(s)	221, 230
AsuHPI	GGTGA	1 cut(s)	280
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	49, 52, 204
BccI	CCATC	3 cut(s)	108, 198, 368
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	3 cut(s)	63, 66, 193
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	3 cut(s)	64, 67, 194
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 230
BmiI	GGNNCC	2 cut(s)	148, 223
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	235
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	131, 270
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	2 cut(s)	209, 349
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	5, 305
BseNI	ACTGG	2 cut(s)	131, 270
BseXI	GCAGC	3 cut(s)	49, 52, 204
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	292
BslFI	GGGAC	2 cut(s)	143, 295
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	143, 295
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	89, 172, 313
Bsp1720I	GCTNAGC	1 cut(s)	14
BspACI	CCGC	4 cut(s)	6, 113, 219, 252
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	6, 304
BspLI	GGNNCC	2 cut(s)	148, 223
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	84, 180
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	131, 270
BssMI	GATC	3 cut(s)	89, 172, 313
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	301, 428
Bst6I	CTCTTC	2 cut(s)	52, 373
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	138, 250
BstDEI	CTNAG	2 cut(s)	14, 291
BstF5I	GGATG	2 cut(s)	209, 349
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	3 cut(s)	149, 158, 192
BstKTI	GATC	3 cut(s)	92, 175, 316
BstMBI	GATC	3 cut(s)	89, 172, 313
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 146, 153, 155, 258
BstV1I	GCAGC	3 cut(s)	49, 52, 204
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	209, 349
BtsIMutI	CAGTG	3 cut(s)	306, 323, 369
Cac8I	GCNNGC	2 cut(s)	138, 250
CfoI	GCGC	3 cut(s)	149, 158, 192
Cfr13I	GGNCC	2 cut(s)	221, 230
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	5 cut(s)	13, 62, 231, 290, 384
CviKI_1	RGCY	5 cut(s)	13, 62, 231, 290, 384
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	14, 291
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	3 cut(s)	91, 174, 315
DpnII	GATC	3 cut(s)	89, 172, 313
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	52, 373
EarI	CTCTTC	2 cut(s)	52, 373
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
FaeI	CATG	1 cut(s)	280
FaiI	YATR	5 cut(s)	23, 106, 278, 311, 387
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	2 cut(s)	143, 295
FatI	CATG	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	63, 66, 193
FokI	GGATG	2 cut(s)	216, 356
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	63, 66, 193
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	3 cut(s)	148, 157, 191
GluI	GCNGC	3 cut(s)	63, 66, 193
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	231
HhaI	GCGC	3 cut(s)	149, 158, 192
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	3 cut(s)	147, 156, 190
HinP1I	GCGC	3 cut(s)	147, 156, 190
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	409, 424
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	409, 424
HpyAV	CCTTC	3 cut(s)	160, 190, 223
HpyCH4III	ACNGT	2 cut(s)	301, 428
HpyCH4IV	ACGT	2 cut(s)	95, 161
HpyCH4V	TGCA	3 cut(s)	47, 321, 389
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 146, 153, 155, 258
HpyF3I	CTNAG	2 cut(s)	14, 291
HpySE526I	ACGT	2 cut(s)	95, 161
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	3 cut(s)	147, 156, 190
KasI	GGCGCC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	89, 172, 313
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	239, 287
LpnPI	CCDG	4 cut(s)	112, 251, 270, 278
Lsp1109I	GCAGC	3 cut(s)	49, 52, 204
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	95, 161
MaeIII	GTNAC	2 cut(s)	30, 268
MalI	GATC	3 cut(s)	91, 174, 315
MboI	GATC	3 cut(s)	89, 172, 313
MboII	GAAGA	2 cut(s)	69, 390
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	1 cut(s)	306
Mly113I	GGCGCC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	163, 243, 323, 374
MseI	TTAA	1 cut(s)	357
MwoI	GCNNNNNNNGC	5 cut(s)	74, 146, 153, 155, 258
NarI	GGCGCC	1 cut(s)	147
NdeII	GATC	3 cut(s)	89, 172, 313
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	148, 223
NmuCI	GTSAC	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	64, 67, 194
PluTI	GGCGCC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	148, 223
PspPI	GGNCC	2 cut(s)	221, 230
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	63, 66, 193
Sau3AI	GATC	3 cut(s)	89, 172, 313
Sau96I	GGNCC	2 cut(s)	221, 230
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	7 cut(s)	15, 64, 98, 164, 292, 334, 402
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	4 cut(s)	6, 113, 219, 252
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	301, 428
TaiI	ACGT	2 cut(s)	98, 164
TaqI	TCGA	2 cut(s)	165, 183
TasI	AATT	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	3 cut(s)	306, 323, 376
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	62, 65, 192
Tsp45I	GTSAC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	3 cut(s)	306, 323, 376
VpaK11BI	GGWCC	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.