Rh3BG033600

chitin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000898
Physical Location & Seq
Reverse (-)
2234581 .. 2235292
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG033600.1

Sequence Viewer

Length: 615 bp
ATGGGTAGACTCAGTGGTTGCATTTTGGTACTACTAGTGTGCATAATAAGTGGTGGTGTAGCCCAACAATGTGGCCGGCAAGCGGGCGGCAAAACTTGTGCCGGCAACCTGTGTTGTAGCCAGTACGGCTACTGTGGCACCTCCGATGATTACTGCTCCCCATCTAAGGGATGCCAGAGCAAATGTAGCCGTGGCGGTGGAGGTGAGAGCGCGTCCAATGTGCGTTCAACGTATCATATGTATAATCCGGAGCAACAGGGATGGGACTTGGGTGCAGTGAGTGCTTATTGCGCTACTTGGGATGCTAGCAAACCCTACTCATGGCGAAGTAAATATGGCTGGACAGCTTTCTGTGGCCCGGCCGGGCCACATGGCCAAGCTGCTTGTGGCAAATGCTTAAGGGTTAAAAATACGCGGACCGGAGCTCAAACGACGGTGAGGATTGTGGATCAATGCAGTAATGGAGGCTTGGATTTGGATGTGGGTGTGTTCCAAAAATTAGACACTGATGGAAGTGGATATGCACAAGGTCATCTCATAGTCAACTACCAGTTTGTCGACTGTGGAAATCTCCTCGATTCCCTGCTTTCTGATGGTGATAAAGATGTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin Chitin_bind_1

Protein Analysis

204

Amino Acids

21.49

Weight (kDa)

7.38

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 23 - 62 4e-13 Chitin recognition protein
Barwin PF00967 70 - 188 7.3e-63 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 2 cut(s) 7, 558
AccII CGCG 2 cut(s) 212, 415
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 4 cut(s) 83, 87, 195, 415
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 3 cut(s) 73, 360, 373
AfaI GTAC 2 cut(s) 30, 125
AfiI CCNNNNNNNGG 4 cut(s) 82, 166, 167, 321
AflII CTTAAG 1 cut(s) 397
AgsI TTSAA 1 cut(s) 228
AhlI ACTAGT 1 cut(s) 34
AluBI AGCT 3 cut(s) 347, 380, 425
AluI AGCT 3 cut(s) 347, 380, 425
Alw21I GWGCWC 1 cut(s) 427
AlwI GGATC 1 cut(s) 456
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 5 cut(s) 73, 355, 360, 365, 373
ApeKI GCWGC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 212, 293
AspS9I GGNCC 3 cut(s) 356, 365, 417
AsuC2I CCSGG 2 cut(s) 359, 364
AsuHPI GGTGA 3 cut(s) 215, 448, 608
AsuNHI GCTAGC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 417
BalI TGGCCA 1 cut(s) 375
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 367
BccI CCATC 4 cut(s) 169, 255, 503, 587
BceAI ACGGC 2 cut(s) 142, 174
BcnI CCSGG 2 cut(s) 359, 364
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 306
BfrI CTTAAG 1 cut(s) 397
BglI GCCNNNNNGGC 1 cut(s) 126
BisI GCNGC 2 cut(s) 88, 381
BlsI GCNGC 2 cut(s) 89, 382
Bme1390I CCNGG 2 cut(s) 359, 364
Bme18I GGWCC 1 cut(s) 417
BmgT120I GGNCC 3 cut(s) 356, 365, 417
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 2 cut(s) 359, 364
BmsI GCATC 2 cut(s) 161, 292
BmtI GCTAGC 1 cut(s) 309
BpuMI CCSGG 2 cut(s) 359, 364
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 2 cut(s) 247, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 166, 167, 321
Bse118I RCCGGY 2 cut(s) 75, 101
Bse1I ACTGG 2 cut(s) 121, 550
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 4 cut(s) 176, 266, 307, 484
BseLI CCNNNNNNNGG 4 cut(s) 82, 166, 167, 321
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 121, 550
BseRI GAGGAG 1 cut(s) 563
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 2 cut(s) 212, 415
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 5 cut(s) 75, 357, 362, 367, 375
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 6 cut(s) 76, 102, 248, 359, 363, 420
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 4 cut(s) 82, 166, 167, 321
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 5 cut(s) 75, 357, 362, 367, 375
Bsp1286I GDGCHC 1 cut(s) 427
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 4 cut(s) 83, 87, 195, 415
BspANI GGCC 5 cut(s) 75, 357, 362, 367, 375
BspCNI CTCAG 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 2 cut(s) 212, 415
BspLI GGNNCC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 309
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 75, 101
BsrI ACTGG 2 cut(s) 121, 550
BssAI RCCGGY 2 cut(s) 75, 101
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 134, 436, 563
BstAFI CTTAAG 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 77, 81, 85, 103, 307
BstDEI CTNAG 2 cut(s) 11, 165
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 4 cut(s) 176, 266, 307, 484
BstFNI CGCG 2 cut(s) 212, 415
BstHHI GCGC 2 cut(s) 212, 293
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 5 cut(s) 126, 135, 186, 281, 290
BstSCI CCNGG 2 cut(s) 357, 362
BstUI CGCG 2 cut(s) 212, 415
BstV1I GCAGC 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 360
BsuRI GGCC 5 cut(s) 75, 357, 362, 367, 375
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 4 cut(s) 176, 266, 307, 484
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 19, 282, 504
Cac8I GCNNGC 5 cut(s) 77, 81, 85, 103, 307
CfoI GCGC 2 cut(s) 212, 293
Cfr10I RCCGGY 2 cut(s) 75, 101
Cfr13I GGNCC 3 cut(s) 356, 365, 417
CpoI CGGWCCG 1 cut(s) 417
CseI GACGC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 29, 124
CspI CGGWCCG 1 cut(s) 417
CviAII CATG 2 cut(s) 321, 371
CviQI GTAC 2 cut(s) 29, 124
DdeI CTNAG 2 cut(s) 11, 165
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 3 cut(s) 73, 360, 373
EagI CGGCCG 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 425
EclXI CGGCCG 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 417
Eco52I CGGCCG 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 2 cut(s) 324, 374
FaiI YATR 9 cut(s) 44, 237, 239, 243, 322, 336, 372, 522, 539
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 320, 370
FauI CCCGC 1 cut(s) 76
FauNDI CATATG 1 cut(s) 237
FblI GTMKAC 2 cut(s) 7, 558
Fnu4HI GCNGC 2 cut(s) 88, 381
FokI GGATG 4 cut(s) 183, 273, 314, 491
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 2 cut(s) 88, 381
FspBI CTAG 2 cut(s) 35, 306
GlaI GCGC 2 cut(s) 211, 292
GluI GCNGC 2 cut(s) 88, 381
HaeIII GGCC 5 cut(s) 75, 357, 362, 367, 375
HapII CCGG 6 cut(s) 76, 102, 248, 359, 363, 420
HgaI GACGC 1 cut(s) 201
HhaI GCGC 2 cut(s) 212, 293
Hin1II CATG 2 cut(s) 324, 374
Hin6I GCGC 2 cut(s) 210, 291
HinP1I GCGC 2 cut(s) 210, 291
HincII GTYRAC 2 cut(s) 544, 559
HindII GTYRAC 2 cut(s) 544, 559
HinfI GANTC 2 cut(s) 9, 578
HpaII CCGG 6 cut(s) 76, 102, 248, 359, 363, 420
HphI GGTGA 3 cut(s) 215, 448, 608
Hpy166II GTNNAC 3 cut(s) 8, 544, 559
Hpy188I TCNGA 2 cut(s) 145, 592
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 3 cut(s) 8, 544, 559
Hpy99I CGWCG 1 cut(s) 436
HpyCH4III ACNGT 3 cut(s) 134, 436, 563
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 21, 42, 275, 456, 524
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 135, 186, 281, 290
HpyF3I CTNAG 2 cut(s) 11, 165
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 324, 374
HspAI GCGC 2 cut(s) 210, 291
Kpn2I TCCGGA 1 cut(s) 247
KroI GCCGGC 2 cut(s) 75, 101
KroNI GCCGGC 2 cut(s) 77, 103
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 3 cut(s) 161, 250, 422
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 2 cut(s) 161, 292
MaeI CTAG 2 cut(s) 35, 306
MaeII ACGT 1 cut(s) 230
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 3
MnlI CCTC 5 cut(s) 151, 194, 432, 458, 584
Mox20I TGGCCA 1 cut(s) 375
MroI TCCGGA 1 cut(s) 247
MroNI GCCGGC 2 cut(s) 75, 101
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 398, 405
Msp20I TGGCCA 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 397
MspI CCGG 6 cut(s) 76, 102, 248, 359, 363, 420
MspR9I CCNGG 2 cut(s) 359, 364
MvnI CGCG 2 cut(s) 212, 415
MwoI GCNNNNNNNGC 5 cut(s) 126, 135, 186, 281, 290
NaeI GCCGGC 2 cut(s) 77, 103
NciI CCSGG 2 cut(s) 359, 364
NdeI CATATG 1 cut(s) 237
NdeII GATC 1 cut(s) 448
NgoMIV GCCGGC 2 cut(s) 75, 101
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 2 cut(s) 324, 374
NlaIV GGNNCC 1 cut(s) 139
PdiI GCCGGC 2 cut(s) 77, 103
PfeI GAWTC 1 cut(s) 578
PkrI GCNGC 2 cut(s) 89, 382
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
Psp124BI GAGCTC 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 356, 365, 417
RsaI GTAC 2 cut(s) 30, 125
RsaNI GTAC 2 cut(s) 29, 124
Rsr2I CGGWCCG 1 cut(s) 417
RsrII CGGWCCG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 427
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 2 cut(s) 398, 405
SatI GCNGC 2 cut(s) 88, 381
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 3 cut(s) 356, 365, 417
SchI GAGTC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 359, 364
SduI GDGCHC 1 cut(s) 427
SetI ASST 8 cut(s) 111, 143, 205, 233, 349, 382, 427, 532
SfaNI GCATC 2 cut(s) 161, 292
SinI GGWCC 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 1 cut(s) 497
SsiI CCGC 4 cut(s) 83, 87, 195, 415
SspMI CTAG 2 cut(s) 35, 306
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 357, 362
TaaI ACNGT 3 cut(s) 134, 436, 563
TaiI ACGT 1 cut(s) 233
TaqI TCGA 2 cut(s) 558, 576
TasI AATT 1 cut(s) 497
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 2 cut(s) 398, 405
Tru9I TTAA 2 cut(s) 398, 405
TscAI CASTG 3 cut(s) 19, 282, 511
TseI GCWGC 1 cut(s) 380
TspRI CASTG 3 cut(s) 19, 282, 511
Vha464I CTTAAG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmiI GTMKAC 2 cut(s) 7, 558
XspI CTAG 2 cut(s) 35, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.