RLG00000025698

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000898
Physical Location & Seq
Forward (+)
47702788 .. 47703177
390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025698

Sequence Viewer

Length: 390 bp
ATGGCCGGAATTGCTTCTGCGCAAAGTGCTACTAACGTGAGAGCCACGTACCACCTCTACAATCCGCAGGACAACAACTGGGACTTGCGAGCCGTGAGTGCCTACTGCGCGACGTGGGATGCCGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCGCCTTCTGTGGCCCCCAGGGCCCGACCGGACAAGAGGCCTGTGGAAAGTGCCTCCGAGTGACGAACACCGCTACAGGAGCTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAATGTGTTTAACCAGATAGACACGAACGGAATTGGGTATCAGCAAGGACATCTTACAGTCAACTACGACTTTGTTGACTGTGGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

130

Amino Acids

14.0

Weight (kDa)

4.71

Isoelectric Point (pI)

13.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 9 - 127 3.7e-66 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 110
AciI CCGC 3 cut(s) 65, 162, 231
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 50, 152
AfiI CCNNNNNNNGG 1 cut(s) 138
AjiI CACGTC 2 cut(s) 114, 298
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 244
AoxI GGCC 4 cut(s) 3, 172, 181, 198
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 144, 273
Asp700I GAANNNNTTC 1 cut(s) 13
AspLEI GCGC 3 cut(s) 22, 110, 144
AspS9I GGNCC 4 cut(s) 159, 173, 181, 182
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 185, 244
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 156, 285
BccI CCATC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 145, 274
BlsI GCNGC 2 cut(s) 146, 275
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 159
BmgBI CACGTC 2 cut(s) 114, 298
BmgT120I GGNCC 4 cut(s) 159, 173, 181, 182
BmiI GGNNCC 2 cut(s) 175, 183
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 132, 177, 178
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 83, 268
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 132, 177, 178
BseGI GGATG 2 cut(s) 124, 161
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 83, 268
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 2 cut(s) 156, 285
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 5, 174, 183, 200
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 6, 189
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 4 cut(s) 5, 174, 183, 200
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 185, 244
BspACI CCGC 3 cut(s) 65, 162, 231
BspANI GGCC 4 cut(s) 5, 174, 183, 200
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 175, 183
BsrI ACTGG 2 cut(s) 83, 268
BssECI CCNNGG 3 cut(s) 132, 177, 178
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 253, 358, 380
BstBAI YACGTR 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 124, 161
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 3 cut(s) 22, 110, 144
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 6 cut(s) 11, 26, 98, 107, 180, 239
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 185
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 156, 285
BsuRI GGCC 4 cut(s) 5, 174, 183, 200
BtrI CACGTC 2 cut(s) 114, 298
BtsCI GGATG 2 cut(s) 124, 161
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 3 cut(s) 22, 110, 144
Cfr13I GGNCC 4 cut(s) 159, 173, 181, 182
Csp6I GTAC 2 cut(s) 49, 151
CviJI RGCY 9 cut(s) 5, 44, 92, 130, 174, 183, 200, 242, 286
CviKI_1 RGCY 9 cut(s) 5, 44, 92, 130, 174, 183, 200, 242, 286
CviQI GTAC 2 cut(s) 49, 151
DdeI CTNAG 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 185, 244
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 185, 244
ErhI CCWWGG 1 cut(s) 132
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 145, 274
FokI GGATG 2 cut(s) 131, 168
FriOI GRGCYC 2 cut(s) 185, 244
Fsp4HI GCNGC 2 cut(s) 145, 274
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 3 cut(s) 21, 109, 143
GluI GCNGC 2 cut(s) 145, 274
HaeIII GGCC 4 cut(s) 5, 174, 183, 200
HapII CCGG 2 cut(s) 6, 189
HhaI GCGC 3 cut(s) 22, 110, 144
Hin6I GCGC 3 cut(s) 20, 108, 142
HinP1I GCGC 3 cut(s) 20, 108, 142
HincII GTYRAC 3 cut(s) 265, 361, 376
HindII GTYRAC 3 cut(s) 265, 361, 376
HpaII CCGG 2 cut(s) 6, 189
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 3 cut(s) 265, 361, 376
Hpy188I TCNGA 1 cut(s) 218
Hpy8I GTNNAC 3 cut(s) 265, 361, 376
Hpy99I CGWCG 2 cut(s) 115, 253
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 253, 358, 380
HpyCH4IV ACGT 4 cut(s) 36, 47, 113, 297
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 26, 98, 107, 180, 239
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 4 cut(s) 36, 47, 113, 297
HspAI GCGC 3 cut(s) 20, 108, 142
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 156, 285
LweI GCATC 1 cut(s) 109
MaeII ACGT 4 cut(s) 36, 47, 113, 297
MaeIII GTNAC 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 185, 244
MluCI AATT 2 cut(s) 9, 330
MnlI CCTC 5 cut(s) 65, 190, 224, 249, 275
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 1 cut(s) 309
MspI CCGG 2 cut(s) 6, 189
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 6 cut(s) 11, 26, 98, 107, 180, 239
NlaIV GGNNCC 2 cut(s) 175, 183
NmuCI GTSAC 1 cut(s) 220
NsbI TGCGCA 1 cut(s) 21
PasI CCCWGGG 1 cut(s) 178
PceI AGGCCT 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 146, 275
Ppu21I YACGTR 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 175, 183
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 4 cut(s) 159, 173, 181, 182
RsaI GTAC 2 cut(s) 50, 152
RsaNI GTAC 2 cut(s) 49, 151
SacI GAGCTC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 145, 274
Sau96I GGNCC 4 cut(s) 159, 173, 181, 182
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 2 cut(s) 185, 244
SetI ASST 6 cut(s) 39, 50, 57, 116, 244, 300
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 234
SfiI GGCCNNNNNGGCC 1 cut(s) 180
SinI GGWCC 1 cut(s) 159
Sse9I AATT 2 cut(s) 9, 330
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 3 cut(s) 65, 162, 231
SstI GAGCTC 1 cut(s) 244
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 253, 358, 380
TaiI ACGT 4 cut(s) 39, 50, 116, 300
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 9, 330
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 275
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 144, 273
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 3 cut(s) 168, 294, 342
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.