Rh3CG031400

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000898
Physical Location & Seq
Reverse (-)
2175205 .. 2175642
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG031400.1

Sequence Viewer

Length: 438 bp
ATGGCCGGAAAACAATGCGTCGTGTTTTTGGTGATGATGTGTGCCGCGATGGCCGGAAGTGCTTCTGCGAAAAGTGCTACTAACGTGAGAGCCACGTACCACCTTTACAATCCGCAGGACAACAACTGGGACTTGCGAGCCGTAAGTGCCTACTGCGCGACGTGGGATGCTGACAAGCCCTTGGAATGGCGCAGCAAGTACGGATGGACCACCTTCTGTGGCCCCGCAGGCCCGACTGGACAAGAGGCCTGCGGAAAGTGCCTGCTAGTGACGAACACCGCGACAGGAGCTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAATGTGTTTAACCAGATAGACACGGACGGAAGTGGGTATCAGCAAGGACACCTTACAGTCAACTACGACTTTGTCGACTGTGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

145

Amino Acids

15.64

Weight (kDa)

4.64

Isoelectric Point (pI)

14.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 25 - 143 5.3e-64 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 312, 423
AccII CGCG 3 cut(s) 47, 158, 281
AciI CCGC 5 cut(s) 45, 113, 225, 252, 279
AcoI YGGCCR 2 cut(s) 3, 51
AfaI GTAC 2 cut(s) 98, 200
AfiI CCNNNNNNNGG 1 cut(s) 186
AjiI CACGTC 2 cut(s) 162, 346
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 292
AoxI GGCC 5 cut(s) 3, 51, 220, 229, 246
ApeKI GCWGC 2 cut(s) 192, 321
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 2 cut(s) 158, 192
AspS9I GGNCC 3 cut(s) 207, 221, 230
AsuHPI GGTGA 2 cut(s) 43, 313
AvaII GGWCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 204, 333
BccI CCATC 2 cut(s) 43, 198
BceAI ACGGC 1 cut(s) 125
BfaI CTAG 1 cut(s) 266
BglI GCCNNNNNGGC 2 cut(s) 50, 228
BisI GCNGC 3 cut(s) 45, 193, 322
BlsI GCNGC 3 cut(s) 46, 194, 323
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 2 cut(s) 162, 346
BmgT120I GGNCC 3 cut(s) 207, 221, 230
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 131, 241, 316
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 172, 209
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 3 cut(s) 131, 241, 316
BseXI GCAGC 2 cut(s) 204, 333
BsgI GTGCAG 1 cut(s) 340
Bsh1236I CGCG 3 cut(s) 47, 158, 281
BshFI GGCC 5 cut(s) 5, 53, 222, 231, 248
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 6, 54
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 5 cut(s) 5, 53, 222, 231, 248
Bsp1286I GDGCHC 1 cut(s) 292
BspACI CCGC 5 cut(s) 45, 113, 225, 252, 279
BspANI GGCC 5 cut(s) 5, 53, 222, 231, 248
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 3 cut(s) 47, 158, 281
BspLI GGNNCC 1 cut(s) 223
BsrI ACTGG 3 cut(s) 131, 241, 316
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 301, 406, 428
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 4 cut(s) 138, 229, 250, 263
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 172, 209
BstFNI CGCG 3 cut(s) 47, 158, 281
BstHHI GCGC 2 cut(s) 158, 192
BstMWI GCNNNNNNNGC 8 cut(s) 50, 59, 74, 146, 155, 228, 258, 287
BstUI CGCG 3 cut(s) 47, 158, 281
BstV1I GCAGC 2 cut(s) 204, 333
BsuRI GGCC 5 cut(s) 5, 53, 222, 231, 248
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 2 cut(s) 162, 346
BtsCI GGATG 2 cut(s) 172, 209
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 4 cut(s) 138, 229, 250, 263
CfoI GCGC 2 cut(s) 158, 192
Cfr13I GGNCC 3 cut(s) 207, 221, 230
CseI GACGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 97, 199
CviQI GTAC 2 cut(s) 97, 199
DdeI CTNAG 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 3, 51
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 143
FauI CCCGC 1 cut(s) 232
FblI GTMKAC 2 cut(s) 312, 423
Fnu4HI GCNGC 3 cut(s) 45, 193, 322
FokI GGATG 2 cut(s) 179, 216
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 3 cut(s) 45, 193, 322
FspBI CTAG 1 cut(s) 266
GlaI GCGC 2 cut(s) 157, 191
GluI GCNGC 3 cut(s) 45, 193, 322
HaeIII GGCC 5 cut(s) 5, 53, 222, 231, 248
HapII CCGG 2 cut(s) 6, 54
HgaI GACGC 1 cut(s) 7
HhaI GCGC 2 cut(s) 158, 192
Hin6I GCGC 2 cut(s) 156, 190
HinP1I GCGC 2 cut(s) 156, 190
HincII GTYRAC 3 cut(s) 313, 409, 424
HindII GTYRAC 3 cut(s) 313, 409, 424
HpaII CCGG 2 cut(s) 6, 54
HphI GGTGA 2 cut(s) 43, 313
Hpy166II GTNNAC 3 cut(s) 313, 409, 424
Hpy8I GTNNAC 3 cut(s) 313, 409, 424
Hpy99I CGWCG 3 cut(s) 23, 163, 301
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 3 cut(s) 301, 406, 428
HpyCH4IV ACGT 4 cut(s) 84, 95, 161, 345
HpyCH4V TGCA 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 59, 74, 146, 155, 228, 258, 287
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 4 cut(s) 84, 95, 161, 345
HspAI GCGC 2 cut(s) 156, 190
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 2 cut(s) 204, 333
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 266
MaeII ACGT 4 cut(s) 84, 95, 161, 345
MaeIII GTNAC 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 292
MnlI CCTC 4 cut(s) 238, 297, 323, 424
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 1 cut(s) 357
MspI CCGG 2 cut(s) 6, 54
MvnI CGCG 3 cut(s) 47, 158, 281
MwoI GCNNNNNNNGC 8 cut(s) 50, 59, 74, 146, 155, 228, 258, 287
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 268
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 420
PdmI GAANNNNTTC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 3 cut(s) 46, 194, 323
Ppu21I YACGTR 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 3 cut(s) 207, 221, 230
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 2 cut(s) 98, 200
RsaNI GTAC 2 cut(s) 97, 199
SacI GAGCTC 1 cut(s) 292
SalI GTCGAC 2 cut(s) 311, 422
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 45, 193, 322
Sau96I GGNCC 3 cut(s) 207, 221, 230
SduI GDGCHC 1 cut(s) 292
SetI ASST 8 cut(s) 87, 98, 105, 164, 215, 292, 348, 402
SfaNI GCATC 1 cut(s) 157
SfiI GGCCNNNNNGGCC 1 cut(s) 228
SinI GGWCC 1 cut(s) 207
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 5 cut(s) 45, 113, 225, 252, 279
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 292
StuI AGGCCT 1 cut(s) 248
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 3 cut(s) 301, 406, 428
TaiI ACGT 4 cut(s) 87, 98, 164, 348
TaqI TCGA 2 cut(s) 312, 423
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 192, 321
Tsp45I GTSAC 1 cut(s) 268
TspGWI ACGGA 4 cut(s) 216, 342, 386, 390
TspRI CASTG 1 cut(s) 323
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 207
XmiI GTMKAC 2 cut(s) 312, 423
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.