Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Forward (+)

80143 .. 80757

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgccatacaatttggggcactttaaaaatccttacatgcaccaacctccgcctcctataaattcaatcccttacttccctgatcatctcccatatccccgatcgtatactaatcagttatcagaaaatggccggaaaacaatgcgtcgtgtttttggtgatggtgtgtgcggcgatggccggaagtgcttctgcgcaaagtgctactatcgtgacttcgtgagagccacgtaccacctttacaatccgcaggacaacaactgggacttgcgagccgtaagtgcctactgcgcgaagtgggatgccgacaagcccttggaatggcgcagcaagtacggatggaccaccttctgtggccccgcaggcccgaccggacaagaggcctgcggaaagtgcctgctagtgacgaacaccgcgacaggagctcaggcgacggtgaggattgtcgaccagtgcagcaacggagggctggacttggacgtgaatgtgtttaaccagatagacacggacggaagtgggtatcagcaaggacaccatacagtcaactatacgactttgtcgactgtgaggactaaactaattaaacccttgctagcttccatcatgaattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

8.69

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	196
AccI	GTMKAC	3 cut(s)	107, 447, 560
AccII	CGCG	2 cut(s)	293, 416
AciI	CCGC	6 cut(s)	50, 171, 248, 360, 387, 414
AcoI	YGGCCR	2 cut(s)	130, 178
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	2 cut(s)	233, 335
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	66
AjiI	CACGTC	1 cut(s)	481
AluBI	AGCT	2 cut(s)	425, 596
AluI	AGCT	2 cut(s)	425, 596
Alw21I	GWGCWC	1 cut(s)	427
AoxI	GGCC	5 cut(s)	130, 178, 355, 364, 381
ApeKI	GCWGC	2 cut(s)	327, 456
ApoI	RAATTY	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	3 cut(s)	197, 293, 327
AspS9I	GGNCC	3 cut(s)	342, 356, 365
AsuHPI	GGTGA	2 cut(s)	170, 448
AsuNHI	GCTAGC	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	339, 468
BccI	CCATC	4 cut(s)	155, 170, 333, 608
BceAI	ACGGC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	401, 593
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	172, 328, 457
BlsI	GCNGC	3 cut(s)	173, 329, 458
Bme18I	GGWCC	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	342, 356, 365
BmiI	GGNNCC	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	266, 451
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	307, 344
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	2 cut(s)	266, 451
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	339, 468
BsgI	GTGCAG	1 cut(s)	475
Bsh1236I	CGCG	2 cut(s)	293, 416
Bsh1285I	CGRYCG	2 cut(s)	104, 372
BshFI	GGCC	5 cut(s)	132, 180, 357, 366, 383
BsiEI	CGRYCG	2 cut(s)	104, 372
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	133, 181, 372
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	132, 180, 357, 366, 383
Bsp1286I	GDGCHC	2 cut(s)	21, 427
Bsp143I	GATC	2 cut(s)	82, 101
BspACI	CCGC	6 cut(s)	50, 171, 248, 360, 387, 414
BspANI	GGCC	5 cut(s)	132, 180, 357, 366, 383
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	2 cut(s)	293, 416
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	266, 451
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	82, 101
BssNAI	GTATAC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	315
Bst1107I	GTATAC	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	436, 541, 565
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	273, 364, 385, 398, 594
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	307, 344
BstFNI	CGCG	2 cut(s)	293, 416
BstHHI	GCGC	3 cut(s)	197, 293, 327
BstKTI	GATC	2 cut(s)	85, 104
BstMBI	GATC	2 cut(s)	82, 101
BstMCI	CGRYCG	2 cut(s)	104, 372
BstMWI	GCNNNNNNNGC	8 cut(s)	177, 186, 201, 281, 290, 363, 393, 422
BstNSI	RCATGY	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	2 cut(s)	293, 416
BstV1I	GCAGC	2 cut(s)	339, 468
BstZ17I	GTATAC	1 cut(s)	108
BsuRI	GGCC	5 cut(s)	132, 180, 357, 366, 383
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	307, 344
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	5 cut(s)	273, 364, 385, 398, 594
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	3 cut(s)	197, 293, 327
Cfr13I	GGNCC	3 cut(s)	342, 356, 365
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	232, 334
CviAII	CATG	2 cut(s)	37, 604
CviQI	GTAC	2 cut(s)	232, 334
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	84, 103
DpnII	GATC	2 cut(s)	82, 101
DraI	TTTAAA	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	130, 178
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	40, 607
FaiI	YATR	8 cut(s)	7, 38, 59, 94, 108, 537, 549, 605
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	36, 603
FauI	CCCGC	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	3 cut(s)	107, 447, 560
Fnu4HI	GCNGC	3 cut(s)	172, 328, 457
FokI	GGATG	2 cut(s)	314, 351
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	3 cut(s)	172, 328, 457
FspBI	CTAG	2 cut(s)	401, 593
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	3 cut(s)	196, 292, 326
GluI	GCNGC	3 cut(s)	172, 328, 457
HaeIII	GGCC	5 cut(s)	132, 180, 357, 366, 383
HapII	CCGG	3 cut(s)	133, 181, 372
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	3 cut(s)	197, 293, 327
Hin1II	CATG	2 cut(s)	40, 607
Hin6I	GCGC	3 cut(s)	195, 291, 325
HinP1I	GCGC	3 cut(s)	195, 291, 325
HincII	GTYRAC	3 cut(s)	448, 544, 561
HindII	GTYRAC	3 cut(s)	448, 544, 561
HpaII	CCGG	3 cut(s)	133, 181, 372
HphI	GGTGA	2 cut(s)	170, 448
Hpy166II	GTNNAC	4 cut(s)	108, 448, 544, 561
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	3 cut(s)	212, 220, 604
Hpy8I	GTNNAC	4 cut(s)	108, 448, 544, 561
Hpy99I	CGWCG	2 cut(s)	150, 436
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	3 cut(s)	436, 541, 565
HpyCH4IV	ACGT	2 cut(s)	230, 480
HpyCH4V	TGCA	2 cut(s)	40, 456
HpyF10VI	GCNNNNNNNGC	8 cut(s)	177, 186, 201, 281, 290, 363, 393, 422
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	2 cut(s)	230, 480
Hsp92II	CATG	2 cut(s)	40, 607
HspAI	GCGC	3 cut(s)	195, 291, 325
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 101
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	2 cut(s)	339, 468
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	401, 593
MaeII	ACGT	2 cut(s)	230, 480
MaeIII	GTNAC	2 cut(s)	212, 403
MalI	GATC	2 cut(s)	84, 103
MboI	GATC	2 cut(s)	82, 101
MhlI	GDGCHC	2 cut(s)	21, 427
MluCI	AATT	4 cut(s)	10, 61, 579, 607
MnlI	CCTC	6 cut(s)	57, 63, 373, 432, 458, 561
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	3 cut(s)	24, 492, 582
MspI	CCGG	3 cut(s)	133, 181, 372
MvnI	CGCG	2 cut(s)	293, 416
MwoI	GCNNNNNNNGC	8 cut(s)	177, 186, 201, 281, 290, 363, 393, 422
NdeII	GATC	2 cut(s)	82, 101
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	40, 607
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	212, 403
NsbI	TGCGCA	1 cut(s)	196
NspI	RCATGY	1 cut(s)	40
PagI	TCATGA	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	2 cut(s)	413, 557
PdmI	GAANNNNTTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	556
PkrI	GCNGC	3 cut(s)	173, 329, 458
Ple19I	CGATCG	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	3 cut(s)	342, 356, 365
PsyI	GACNNNGTC	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	233, 335
RsaNI	GTAC	2 cut(s)	232, 334
SacI	GAGCTC	1 cut(s)	427
SalI	GTCGAC	2 cut(s)	446, 559
SaqAI	TTAA	3 cut(s)	24, 492, 582
SatI	GCNGC	3 cut(s)	172, 328, 457
Sau3AI	GATC	2 cut(s)	82, 101
Sau96I	GGNCC	3 cut(s)	342, 356, 365
SduI	GDGCHC	2 cut(s)	21, 427
SetI	ASST	7 cut(s)	49, 233, 240, 350, 427, 483, 598
SfaNI	GCATC	1 cut(s)	292
SfiI	GGCCNNNNNGGCC	1 cut(s)	363
SinI	GGWCC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	10, 61, 579, 607
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	6 cut(s)	50, 171, 248, 360, 387, 414
SspMI	CTAG	2 cut(s)	401, 593
SstI	GAGCTC	1 cut(s)	427
StuI	AGGCCT	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	436, 541, 565
TaiI	ACGT	2 cut(s)	233, 483
TaqI	TCGA	2 cut(s)	447, 560
TasI	AATT	4 cut(s)	10, 61, 579, 607
TauI	GCSGC	1 cut(s)	174
Tru1I	TTAA	3 cut(s)	24, 492, 582
Tru9I	TTAA	3 cut(s)	24, 492, 582
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	212, 403
TseI	GCWGC	2 cut(s)	327, 456
Tsp45I	GTSAC	2 cut(s)	212, 403
TspGWI	ACGGA	4 cut(s)	351, 477, 521, 525
TspRI	CASTG	1 cut(s)	458
Tth111I	GACNNNGTC	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	3 cut(s)	107, 447, 560
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	401, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.