Rw3G002390

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000898
Physical Location & Seq
Reverse (-)
2088219 .. 2100392
12174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002390.1

Sequence Viewer

Length: 438 bp
ATGGACGGGAAGATGAGCATTGTCTTGTTACTTATCTTCTGTGCAATAGTGGGAAGTGCTTCTGCTACTTCTAATGTGAGAGCCACATACCACCTCTACAATCCGCAAGATAACAACTGGGACTTGCTTGCAGTAGGAGCCTTCTGCGCAACATTTGATGCCAATCAGCCCTTCGAATGGCGCAGCAGGTATGGATGGACCGCCTTCTGCGGACCTGAAGGCCCTAGCGGAGCGGAGGCCTGCGGAAAATGCCTACTGTGCCTCCGAGTGACGAACACCGCGACAGGAGCTCAGGCGACGGTGAGGATTGTCGACCAGTGCAGCAACGGAGGGCTGGACTTGGACGTGAATGTGTTTAACCAGATAGACACGGACGGAAGTGGGTATCAGCAAGGACATCTTACAGTCAACTACGACTTTGTCGACTGTGGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

145

Amino Acids

15.59

Weight (kDa)

4.38

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 23 - 143 4.2e-57 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 233
AccI GTMKAC 2 cut(s) 312, 423
AccII CGCG 1 cut(s) 281
AciI CCGC 7 cut(s) 104, 201, 210, 228, 233, 243, 279
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 177
AjiI CACGTC 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 292
AoxI GGCC 2 cut(s) 220, 237
ApeKI GCWGC 2 cut(s) 183, 321
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 2 cut(s) 149, 183
AspS9I GGNCC 3 cut(s) 198, 212, 221
AsuHPI GGTGA 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 2 cut(s) 198, 212
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 195, 333
BccI CCATC 1 cut(s) 189
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 2 cut(s) 184, 322
BlsI GCNGC 2 cut(s) 185, 323
Bme18I GGWCC 2 cut(s) 198, 212
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 198, 212, 221
BmiI GGNNCC 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 122, 316
Bse8I GATNNNNATC 1 cut(s) 162
BseGI GGATG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 122, 316
BseXI GCAGC 2 cut(s) 195, 333
BsgI GTGCAG 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 2 cut(s) 222, 239
BsiHKAI GWGCWC 1 cut(s) 292
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 222, 239
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 292
BspACI CCGC 7 cut(s) 104, 201, 210, 228, 233, 243, 279
BspANI GGCC 2 cut(s) 222, 239
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 233
BsrI ACTGG 2 cut(s) 122, 316
Bst4CI ACNGT 4 cut(s) 258, 301, 406, 428
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 129, 241
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 2 cut(s) 149, 183
BstMWI GCNNNNNNNGC 5 cut(s) 137, 146, 249, 258, 287
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 195, 333
BsuRI GGCC 2 cut(s) 222, 239
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 323
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 129, 241
CfoI GCGC 2 cut(s) 149, 183
Cfr13I GGNCC 3 cut(s) 198, 212, 221
CviJI RGCY 7 cut(s) 83, 140, 169, 222, 239, 290, 334
CviKI_1 RGCY 7 cut(s) 83, 140, 169, 222, 239, 290, 334
DdeI CTNAG 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 290
Eco147I AGGCCT 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 198, 212
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 292
FaiI YATR 2 cut(s) 88, 192
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 134
FblI GTMKAC 2 cut(s) 312, 423
Fnu4HI GCNGC 2 cut(s) 184, 322
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 184, 322
FspBI CTAG 1 cut(s) 225
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 2 cut(s) 148, 182
GluI GCNGC 2 cut(s) 184, 322
HaeIII GGCC 2 cut(s) 222, 239
HhaI GCGC 2 cut(s) 149, 183
Hin6I GCGC 2 cut(s) 147, 181
HinP1I GCGC 2 cut(s) 147, 181
HincII GTYRAC 3 cut(s) 313, 409, 424
HindII GTYRAC 3 cut(s) 313, 409, 424
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 313, 409, 424
Hpy188I TCNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 313, 409, 424
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 4 cut(s) 151, 181, 212, 214
HpyCH4III ACNGT 4 cut(s) 258, 301, 406, 428
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 44, 131, 321
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 146, 249, 258, 287
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 345
HspAI GCGC 2 cut(s) 147, 181
LmnI GCTCC 3 cut(s) 137, 230, 287
LpnPI CCDG 9 cut(s) 103, 172, 228, 253, 270, 278, 320, 329, 374
Lsp1109I GCAGC 2 cut(s) 195, 333
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 27, 268
MbiI CCGCTC 1 cut(s) 233
MboII GAAGA 2 cut(s) 22, 28
MhlI GDGCHC 1 cut(s) 292
MnlI CCTC 5 cut(s) 104, 229, 272, 297, 323
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 1 cut(s) 357
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 5 cut(s) 137, 146, 249, 258, 287
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 148
NspV TTCGAA 1 cut(s) 174
PceI AGGCCT 1 cut(s) 239
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 420
PdmI GAANNNNTTC 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 185, 323
Psp124BI GAGCTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 198, 212, 221
PsyI GACNNNGTC 1 cut(s) 419
SacI GAGCTC 1 cut(s) 292
SalI GTCGAC 2 cut(s) 311, 422
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 184, 322
Sau96I GGNCC 3 cut(s) 198, 212, 221
SduI GDGCHC 1 cut(s) 292
SetI ASST 5 cut(s) 96, 191, 217, 292, 348
SfaNI GCATC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 2 cut(s) 198, 212
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 7 cut(s) 104, 201, 210, 228, 233, 243, 279
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 292
StuI AGGCCT 1 cut(s) 239
TaaI ACNGT 4 cut(s) 258, 301, 406, 428
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 174, 312, 423
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 183, 321
Tsp45I GTSAC 1 cut(s) 268
TspGWI ACGGA 3 cut(s) 342, 386, 390
TspRI CASTG 1 cut(s) 323
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 198, 212
XmiI GTMKAC 2 cut(s) 312, 423
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.