Prupe.6G343900_v2.0.a1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000898
Physical Location & Seq
Forward (+)
29587101 .. 29588073
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G343900.1

Sequence Viewer

Length: 525 bp
ATGAATGAGCAGTTTAGGTTGCACAACACCTTATATCCAACAATTAAAAAAGATATTATCATATTAGAGAGAGAGAGAGAGAGAGTGTTGATGAAAATGGCGAAGTTAATGTTTTTGTTATTGGTTTGTGTCATGAGTTTGAACGCAGCAAGTGCCCAAAGTGCAAGCAACGTTAGAGCCACGTACCATATCTACAACCCAGAGAAGATTAACTGGGACTTGAAAGCGGCAAGTGCTTATTGCTCCACTTGGGATGCTAACAAGCCTTTGGAATGGCGTCGCAAGTTTGGATGGACTGCGTTTTGCGGACCTGTTGGGCCTCGTGGACAAGCTTCTTGTGGCAAGTGCTTAACGGTGACAAATGTGAGGACAGGGACACAGGCGAAGGTGAGAATTGTGGATCAGTGCAGCAATGGAGGCCTGGATTTGGACCAGGGTGTGTTTAAACGACTGGACACTGATGGACAAGGCTATGCCCAAGGCCACCTTAGGGTCAACTACCAGTTTGTCAACTGTGGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

175

Amino Acids

19.64

Weight (kDa)

9.24

Isoelectric Point (pI)

22.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 227, 306
AclI AACGTT 1 cut(s) 171
AclWI GGATC 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 427, 490
AgsI TTSAA 2 cut(s) 142, 223
AjnI CCWGG 2 cut(s) 420, 432
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
AlwI GGATC 1 cut(s) 408
AoxI GGCC 3 cut(s) 317, 418, 481
ApeKI GCWGC 2 cut(s) 146, 408
AspS9I GGNCC 3 cut(s) 308, 317, 430
AsuHPI GGTGA 2 cut(s) 367, 400
AvaII GGWCC 2 cut(s) 308, 430
AxyI CCTNAGG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 157
BauI CACGAG 1 cut(s) 321
BbvI GCAGC 2 cut(s) 158, 420
BccI CCATC 2 cut(s) 285, 455
BciT130I CCWGG 2 cut(s) 422, 434
BisI GCNGC 3 cut(s) 147, 228, 409
BlsI GCNGC 3 cut(s) 148, 229, 410
Bme1390I CCNGG 2 cut(s) 422, 434
Bme18I GGWCC 2 cut(s) 308, 430
BmgT120I GGNCC 3 cut(s) 308, 317, 430
BmrFI CCNGG 2 cut(s) 422, 434
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 433, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 490
Bse1I ACTGG 3 cut(s) 218, 456, 502
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 2 cut(s) 422, 434
BseDI CCNNGG 2 cut(s) 433, 478
BseGI GGATG 2 cut(s) 259, 296
BseLI CCNNNNNNNGG 2 cut(s) 427, 490
BseMI GCAATG 1 cut(s) 418
BseNI ACTGG 3 cut(s) 218, 456, 502
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 2 cut(s) 158, 420
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 3 cut(s) 319, 420, 483
BslFI GGGAC 2 cut(s) 230, 388
BslI CCNNNNNNNGG 2 cut(s) 427, 490
BsmFI GGGAC 2 cut(s) 230, 388
BsnI GGCC 3 cut(s) 319, 420, 483
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 2 cut(s) 227, 306
BspANI GGCC 3 cut(s) 319, 420, 483
BspHI TCATGA 1 cut(s) 132
BspPI GGATC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 3 cut(s) 218, 456, 502
BssECI CCNNGG 2 cut(s) 433, 478
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 478
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 422, 434
Bst4CI ACNGT 2 cut(s) 355, 515
BstACI GRCGYC 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 259, 296
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 4 cut(s) 152, 161, 233, 417
BstNI CCWGG 2 cut(s) 422, 434
BstSCI CCNGG 2 cut(s) 420, 432
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 158, 420
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 3 cut(s) 319, 420, 483
BtsCI GGATG 2 cut(s) 259, 296
BtsIMutI CAGTG 2 cut(s) 410, 456
Cac8I GCNNGC 1 cut(s) 166
CciI TCATGA 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 308, 317, 430
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 133
CviJI RGCY 7 cut(s) 179, 265, 319, 332, 420, 471, 483
CviKI_1 RGCY 7 cut(s) 179, 265, 319, 332, 420, 471, 483
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 488
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraI TTTAAA 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 478
Eco147I AGGCCT 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 308, 430
Eco81I CCTNAGG 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 420, 432
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 1 cut(s) 136
FaiI YATR 5 cut(s) 34, 62, 134, 189, 474
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 2 cut(s) 230, 388
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 147, 228, 409
FokI GGATG 2 cut(s) 266, 303
Fsp4HI GCNGC 3 cut(s) 147, 228, 409
GluI GCNGC 3 cut(s) 147, 228, 409
HaeIII GGCC 3 cut(s) 319, 420, 483
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 2 cut(s) 496, 511
HindII GTYRAC 2 cut(s) 496, 511
HindIII AAGCTT 1 cut(s) 330
HphI GGTGA 2 cut(s) 367, 400
Hpy166II GTNNAC 3 cut(s) 326, 496, 511
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 3 cut(s) 326, 496, 511
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 355, 515
HpyCH4IV ACGT 2 cut(s) 171, 182
HpyCH4V TGCA 3 cut(s) 22, 164, 408
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 161, 233, 417
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 2 cut(s) 171, 182
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 158, 420
LweI GCATC 1 cut(s) 244
MaeII ACGT 2 cut(s) 171, 182
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 42, 393
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 3 cut(s) 330, 360, 410
MseI TTAA 6 cut(s) 45, 107, 210, 350, 444, 523
MspR9I CCNGG 2 cut(s) 422, 434
MssI GTTTAAAC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 422, 434
MwoI GCNNNNNNNGC 4 cut(s) 152, 161, 233, 417
NdeII GATC 1 cut(s) 400
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 355
PagI TCATGA 1 cut(s) 132
PceI AGGCCT 1 cut(s) 420
PkrI GCNGC 3 cut(s) 148, 229, 410
PmeI GTTTAAAC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 420, 432
PspGI CCWGG 2 cut(s) 420, 432
PspPI GGNCC 3 cut(s) 308, 317, 430
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 6 cut(s) 45, 107, 210, 350, 444, 523
SatI GCNGC 3 cut(s) 147, 228, 409
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 3 cut(s) 308, 317, 430
ScrFI CCNGG 2 cut(s) 422, 434
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 20, 32, 174, 185, 313, 334, 390, 489
SfaNI GCATC 1 cut(s) 244
SinI GGWCC 2 cut(s) 308, 430
Sse9I AATT 2 cut(s) 42, 393
SseBI AGGCCT 1 cut(s) 420
SsiI CCGC 2 cut(s) 227, 306
StuI AGGCCT 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 420, 432
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 355, 515
TaiI ACGT 2 cut(s) 174, 185
TasI AATT 2 cut(s) 42, 393
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 6 cut(s) 45, 107, 210, 350, 444, 523
Tru9I TTAA 6 cut(s) 45, 107, 210, 350, 444, 523
TscAI CASTG 2 cut(s) 410, 463
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 146, 408
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 17, 107
TspRI CASTG 2 cut(s) 410, 463
VpaK11BI GGWCC 2 cut(s) 308, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.