MD04G1225200.v1.1

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000898
Physical Location & Seq
Reverse (-)
30512384 .. 30512901
518 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1225200.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTTGTTACTTTCGGTCATTATCTGTGTATTTGTGAGAAGTGCATGGGGACAAAGTGCTAGTGTGAGATCCACATACCACCTCTACAATCCTGACCAAATCAATTACGATTTGTGGGCTGTGACAAACACTGGGACAGGAGCACAAACAGTGGTGAGAATTATTGATCAATGCAGCAACGGAGGGCTAGACTTGGATGTGAGTATGTTTAATAGATCCGCCCCACCAGAGCAGGAATTCTCATTTCCAACAAGAGTGGAGGGGCTGAATCAGCGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

94

Amino Acids

10.35

Weight (kDa)

5.04

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 40 - 72 2.2e-10 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 63, 210
AcsI RAATTY 1 cut(s) 236
AfeI AGCGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 2 cut(s) 63, 210
Aor51HI AGCGCT 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 186
BclI TGATCA 1 cut(s) 166
BfaI CTAG 2 cut(s) 60, 188
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 145
BslFI GGGAC 2 cut(s) 63, 148
BsmFI GGGAC 2 cut(s) 63, 148
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 3 cut(s) 68, 166, 215
BspACI CCGC 1 cut(s) 219
BspPI GGATC 2 cut(s) 63, 210
BsrI ACTGG 1 cut(s) 136
BssMI GATC 3 cut(s) 68, 166, 215
Bst4CI ACNGT 1 cut(s) 151
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 71, 169, 218
BstMBI GATC 3 cut(s) 68, 166, 215
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 68, 215
BstYI RGATCY 2 cut(s) 68, 215
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 129, 156
CfoI GCGC 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 1 cut(s) 45
CviJI RGCY 3 cut(s) 119, 187, 265
CviKI_1 RGCY 3 cut(s) 119, 187, 265
DpnI GATC 3 cut(s) 70, 168, 217
DpnII GATC 3 cut(s) 68, 166, 215
EciI GGCGGA 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 236
FaeI CATG 1 cut(s) 48
FaiI YATR 4 cut(s) 46, 76, 206, 280
FaqI GGGAC 2 cut(s) 63, 148
FatI CATG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 2 cut(s) 60, 188
GlaI GCGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 277
HhaI GCGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 1 cut(s) 268
HphI GGTGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 44, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 68, 166, 215
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 105, 117, 123, 218, 240
Lsp1109I GCAGC 1 cut(s) 186
MaeI CTAG 2 cut(s) 60, 188
MaeIII GTNAC 2 cut(s) 6, 121
MalI GATC 3 cut(s) 70, 168, 217
MboI GATC 3 cut(s) 68, 166, 215
MflI RGATCY 2 cut(s) 68, 215
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 3 cut(s) 103, 159, 236
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 3 cut(s) 92, 176, 253
MseI TTAA 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 3 cut(s) 68, 166, 215
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 176
PsuI RGATCY 2 cut(s) 68, 215
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 3 cut(s) 68, 166, 215
SduI GDGCHC 1 cut(s) 145
SetI ASST 1 cut(s) 84
Sse9I AATT 3 cut(s) 103, 159, 236
SsiI CCGC 1 cut(s) 219
SspMI CTAG 2 cut(s) 60, 188
TaaI ACNGT 1 cut(s) 151
TaqII GACCGA 1 cut(s) 4
TasI AATT 3 cut(s) 103, 159, 236
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 136, 156
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 136, 156
XapI RAATTY 1 cut(s) 236
XspI CTAG 2 cut(s) 60, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.