Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000898

Physical Location & Seq

Genomic Coordinates Reverse (-)

21484104 .. 21484931

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATGGGCTGTGCCAGCGCCCAAAGTGCGAGTAACGTTAGATCGACGTACCATATCTACAATCCAGAGAAGATAGGATGGAACTTGAACACAGCAGGTGCTTATTGCGCCACTTGGGATGCTAATAAGCCTTTGGAATGGCGTCGGAAGTTTGGATGGACTGCTTTTTGCGGCCCCGTCGGGCCTCGGGGCCAAGCATCTTGTGGCAAGTGCTTAAGGGTGACAAACGTGAGGACAGGAGCTCAGGCAAAGGTGAGAATTGTTGATCAGTGCAGTAATGGAGGCCTAGATTTGGACGAGGGTGTGTTTAAACGACTGGACACTGATGGGAAAGGCTATGCCCAAGGCCACCTTATGGTGAACTACAAGTTTGTCAATTGTGGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Barwin

Protein Analysis

130

Amino Acids

14.1

Weight (kDa)

9.05

Isoelectric Point (pI)

22.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Barwin	PF00967	9 - 127	4e-58	Barwin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04720
fragaria_vesca	FvH4_3g05950 FvH4_3g26010 FvH4_6g02840
malus_domestica	MD04G1225200.v1.1 MD04G1225300.v1.1 MD04G1225400.v1.1 MD12G1242000.v1.1
prunus_persica	Prupe.6G141100_v2.0.a1 Prupe.6G343900_v2.0.a1 Prupe.6G344000_v2.0.a1
pyrus_communis	pycom04g19850 pycom04g19860 pycom12g22150
rosa_chinensis	RchiOBHm_Chr3g0450761 RchiOBHm_Chr3g0450781 RchiOBHm_Chr3g0450841 RchiOBHm_Chr3g0450871 RchiOBHm_Chr3g0450891
rosa_laevigata	RLG00000025696 RLG00000025698 RLG00000025702 RLG00000025705
rosa_multiflora	Rmu_sc0000078.1_g000011 Rmu_sc0000078.1_g000016 Rmu_sc0000078.1_g000022 Rmu_sc0000078.1_g000026
rosa_roxburghii	Rroxscaffold_6G00428430 Rroxscaffold_6G00428490 Rroxscaffold_6G00428510
rosa_rugosa	Rorug02G0630400 Rorug02G0630400 Rorug02G0630400 Rorug02G0630700 Rorug02G0630900
rosa_samantha	Rh3AG031400 Rh3AG031700 Rh3AG032500 Rh3AG032600 Rh3AG033100 Rh3AG033300 Rh3BG031500 Rh3BG031900 Rh3BG032300 Rh3BG032600 Rh3BG032800 Rh3BG033000 Rh3BG033600 Rh3CG030300 Rh3CG030700 Rh3CG031000 Rh3CG031400 Rh3CG031600 Rh3CG031800 Rh3CG032300 Rh3DG031300 Rh3DG031600 Rh3DG031900 Rh3DG032200 Rh3DG032400 Rh3DG032700 Rh3DG033300
rosa_wichuraiana	Rw3G002390 Rw3G002410 Rw3G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	355
AciI	CCGC	1 cut(s)	171
AclI	AACGTT	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	292, 355
AflII	CTTAAG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw21I	GWGCWC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	5 cut(s)	172, 182, 190, 283, 346
AspLEI	GCGC	2 cut(s)	20, 110
AspS9I	GGNCC	3 cut(s)	173, 182, 190
AsuHPI	GGTGA	3 cut(s)	232, 265, 370
AvaI	CYCGRG	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BccI	CCATC	3 cut(s)	72, 150, 320
BclI	TGATCA	1 cut(s)	265
BfaI	CTAG	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	173, 182, 190
BmiI	GGNNCC	2 cut(s)	175, 191
BmsI	GCATC	2 cut(s)	109, 206
Bpu10I	CCTNAGC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	185, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 355
Bse1I	ACTGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	185, 343
BseGI	GGATG	3 cut(s)	83, 124, 161
BseLI	CCNNNNNNNGG	2 cut(s)	292, 355
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	292
BshFI	GGCC	5 cut(s)	174, 184, 192, 285, 348
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	292, 355
BsnI	GGCC	5 cut(s)	174, 184, 192, 285, 348
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	41, 265
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	5 cut(s)	174, 184, 192, 285, 348
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	175, 191
BspMI	ACCTGC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	185, 343
BssMI	GATC	2 cut(s)	41, 265
BssNI	GRCGYC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	83, 124, 161
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 110
BstKTI	GATC	2 cut(s)	44, 268
BstMBI	GATC	2 cut(s)	41, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 26, 107
BsuRI	GGCC	5 cut(s)	174, 184, 192, 285, 348
BtsCI	GGATG	3 cut(s)	83, 124, 161
BtsIMutI	CAGTG	2 cut(s)	275, 321
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	20, 110
Cfr13I	GGNCC	3 cut(s)	173, 182, 190
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	9 cut(s)	9, 130, 174, 184, 192, 242, 285, 336, 348
CviKI_1	RGCY	9 cut(s)	9, 130, 174, 184, 192, 242, 285, 336, 348
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	43, 267
DpnII	GATC	2 cut(s)	41, 265
DraI	TTTAAA	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	343
FaiI	YATR	3 cut(s)	54, 339, 356
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	3 cut(s)	90, 131, 168
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	2 cut(s)	19, 109
GluI	GCNGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	5 cut(s)	174, 184, 192, 285, 348
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	20, 110
Hin1I	GRCGYC	1 cut(s)	142
Hin6I	GCGC	2 cut(s)	18, 108
HinP1I	GCGC	2 cut(s)	18, 108
HphI	GGTGA	3 cut(s)	232, 265, 370
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	3 cut(s)	49, 147, 182
HpyCH4IV	ACGT	3 cut(s)	36, 47, 228
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 26, 107
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	3 cut(s)	36, 47, 228
Hsp92I	GRCGYC	1 cut(s)	142
HspAI	GCGC	2 cut(s)	18, 108
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	41, 265
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	28, 78, 81, 222, 230, 302
LweI	GCATC	2 cut(s)	109, 206
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	3 cut(s)	36, 47, 228
MaeIII	GTNAC	2 cut(s)	32, 220
MalI	GATC	2 cut(s)	43, 267
MboI	GATC	2 cut(s)	41, 265
MboII	GAAGA	1 cut(s)	82
MfeI	CAATTG	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	2 cut(s)	258, 376
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	195, 225, 275, 292
MseI	TTAA	3 cut(s)	215, 309, 388
MspCI	CTTAAG	1 cut(s)	214
MssI	GTTTAAAC	1 cut(s)	310
MunI	CAATTG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	15, 26, 107
NdeII	GATC	2 cut(s)	41, 265
NlaIV	GGNNCC	2 cut(s)	175, 191
NmuCI	GTSAC	1 cut(s)	220
PaqCI	CACCTGC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	173
PmeI	GTTTAAAC	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	175, 191
PspPI	GGNCC	3 cut(s)	173, 182, 190
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	215, 309, 388
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	41, 265
Sau96I	GGNCC	3 cut(s)	173, 182, 190
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	7 cut(s)	39, 50, 100, 231, 244, 255, 354
SfaNI	GCATC	2 cut(s)	109, 206
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	258, 376
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	244
StuI	AGGCCT	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	343
TaiI	ACGT	3 cut(s)	39, 50, 231
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	258, 376
TauI	GCSGC	1 cut(s)	174
Tru1I	TTAA	3 cut(s)	215, 309, 388
Tru9I	TTAA	3 cut(s)	215, 309, 388
TscAI	CASTG	2 cut(s)	275, 328
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspRI	CASTG	2 cut(s)	275, 328
Van91I	CCANNNNNTGG	1 cut(s)	355
Vha464I	CTTAAG	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.