RLG00000025696

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000898
Physical Location & Seq
Forward (+)
47698391 .. 47698899
509 bp
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UTR
Exon/CDS
Intron
RLM00000025696

Sequence Viewer

Length: 429 bp
ATGGCCGGGAAGATGAGCATTATCTTGTTACTTATCTTCTGTGCAATAGTGGGAAGTGCTTCTGCTACTGCTAATGTGAGAGCCACGTACCACCTCTACAATCCGCAAGATAACAACTGGGACTTGCTTGCAGTAGGAGCCTTCTGCGCAACATTTGATGCCAATCAGCCCTTCGAATGGCGCAGCAGGTATGGATGGACCGCCTTCTGCAGACCTGATGGCCCTAGCGGAGCAGACGCCTGCGGAAAATGCCTACTGGTGACAAACATGGGGACAGGAGCTCAGGAAACAGTGAGAATTATCGATCAATGCAGCAATGGAGGTTTGGATTTGGATGTGAATGTGTTTTCCCAGATAGACACTGATGGAAGAGGCTATGCACAAGGCGACCTGATTGTCAACTACGACTTTGTGGACTGCGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

4.3

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 24 - 140 2.1e-54 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc16I TGCGCA 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 5 cut(s) 104, 201, 228, 243, 420
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw21I GWGCWC 1 cut(s) 283
AoxI GGCC 2 cut(s) 3, 220
ApeKI GCWGC 2 cut(s) 183, 312
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 2 cut(s) 149, 183
AspS9I GGNCC 2 cut(s) 198, 221
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 195, 324
BccI CCATC 3 cut(s) 189, 212, 359
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 184, 313, 421
BlsI GCNGC 3 cut(s) 185, 314, 422
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 198, 221
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 7
Bsa29I ATCGAT 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 122, 261
Bse3DI GCAATG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 2 cut(s) 200, 340
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 122, 261
BseXI GCAGC 2 cut(s) 195, 324
BshFI GGCC 2 cut(s) 5, 222
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 2 cut(s) 134, 286
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 134, 286
BsnI GGCC 2 cut(s) 5, 222
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 5 cut(s) 104, 201, 228, 243, 420
BspANI GGCC 2 cut(s) 5, 222
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 2 cut(s) 122, 261
BssMI GATC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 129, 241
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 200, 340
BstHHI GCGC 2 cut(s) 149, 183
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 249
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 195, 324
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 2 cut(s) 5, 222
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 2 cut(s) 200, 340
BtsIMutI CAGTG 2 cut(s) 297, 360
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 129, 241
CfoI GCGC 2 cut(s) 149, 183
Cfr13I GGNCC 2 cut(s) 198, 221
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 268
CviJI RGCY 7 cut(s) 5, 83, 140, 169, 222, 281, 375
CviKI_1 RGCY 7 cut(s) 5, 83, 140, 169, 222, 281, 375
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 1 cut(s) 271
FaiI YATR 3 cut(s) 192, 269, 378
FaqI GGGAC 2 cut(s) 134, 286
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 184, 313, 421
FokI GGATG 2 cut(s) 207, 347
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 184, 313, 421
FspBI CTAG 1 cut(s) 225
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 2 cut(s) 148, 182
GluI GCNGC 3 cut(s) 184, 313, 421
HaeIII GGCC 2 cut(s) 5, 222
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 149, 183
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 147, 181
HinP1I GCGC 2 cut(s) 147, 181
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 400, 415
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 400, 415
HpyAV CCTTC 3 cut(s) 151, 181, 214
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 5 cut(s) 44, 131, 210, 312, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 249
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 147, 181
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 3 cut(s) 137, 230, 278
Lsp1109I GCAGC 2 cut(s) 195, 324
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 27, 259
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 22, 28, 381
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 297
MnlI CCTC 3 cut(s) 104, 314, 365
MroXI GAANNNNTTC 1 cut(s) 58
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 249
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 148
NspV TTCGAA 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 58
PkrI GCNGC 3 cut(s) 185, 314, 422
Ppu21I YACGTR 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 198, 221
PstI CTGCAG 1 cut(s) 212
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SacI GAGCTC 1 cut(s) 283
SatI GCNGC 3 cut(s) 184, 313, 421
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 198, 221
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 283
SetI ASST 7 cut(s) 89, 96, 191, 217, 283, 325, 393
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 198
Sse9I AATT 1 cut(s) 297
SsiI CCGC 5 cut(s) 104, 201, 228, 243, 420
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 174, 303
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 423
TscAI CASTG 2 cut(s) 297, 367
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 183, 312
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 2 cut(s) 297, 367
VpaK11BI GGWCC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.