pycom12g22150

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000898
Physical Location & Seq
Forward (+)
23163827 .. 23164427
601 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22150.1

Sequence Viewer

Length: 444 bp
ATGGCAGGGAAGATTGCACCATGGTTTGTATTGTTAGTTTCGGTCATTATCTGTGTACTAGTGGGAAGTGCGTGGGGACAAAGTGCTACTGTGGGATCCACATACCACCTCTACAATCCAGCCCAAATCAATTACGACTTGCGGGCTGTTAGTGCATTCTGCTCAACATGGGATGCCGATCAATCCTACGAATGGCGCAGCAAATATGGATGGACTGCATTTTGCGGACCTGCTGGCCCTAGCGGAGAGGACGTTTGCGGAAAGTGCCTCTTGGTGACAAACACTGGGACAGGAGCACAAACAGTGGTGAGAATTATTGATCAATGCAGCAACGGAGGGCTAGACTTGGATGTGAATATGTTTAACCAAATTGACACCGACGGTAGTGGCTACGCATCAGGCCACCTTATCGTCAACTACGATTTTGTCGACTGCGGCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

148

Amino Acids

15.74

Weight (kDa)

4.31

Isoelectric Point (pI)

16.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 30 - 145 8.2e-57 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 429
AciI CCGC 5 cut(s) 142, 225, 243, 258, 435
AclWI GGATC 2 cut(s) 90, 103
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 192
AhlI ACTAGT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 2 cut(s) 90, 103
AoxI GGCC 2 cut(s) 235, 400
ApeKI GCWGC 2 cut(s) 198, 327
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 227, 236
AsuHPI GGTGA 2 cut(s) 286, 319
AvaII GGWCC 1 cut(s) 227
BamHI GGATCC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 210, 339
BccI CCATC 1 cut(s) 204
BclI TGATCA 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 3 cut(s) 59, 240, 341
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 3 cut(s) 199, 328, 436
BlsI GCNGC 3 cut(s) 200, 329, 437
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 227, 236
BmiI GGNNCC 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 163, 404
BmuI ACTGGG 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 3 cut(s) 178, 215, 355
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 210, 339
BshFI GGCC 2 cut(s) 237, 402
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 2 cut(s) 90, 301
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 90, 301
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 2 cut(s) 237, 402
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 95, 178, 319
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 5 cut(s) 142, 225, 243, 258, 435
BspANI GGCC 2 cut(s) 237, 402
BspLI GGNNCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 2 cut(s) 90, 103
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 95, 178, 319
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 91, 304, 383
BstC8I GCNNGC 2 cut(s) 144, 235
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 3 cut(s) 178, 215, 355
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 3 cut(s) 98, 181, 322
BstMBI GATC 3 cut(s) 95, 178, 319
BstMWI GCNNNNNNNGC 2 cut(s) 152, 264
BstV1I GCAGC 2 cut(s) 210, 339
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 2 cut(s) 237, 402
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 178, 215, 355
BtsIMutI CAGTG 2 cut(s) 282, 309
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 144, 235
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 227, 236
Csp6I GTAC 1 cut(s) 56
CviAII CATG 2 cut(s) 21, 168
CviJI RGCY 6 cut(s) 122, 146, 237, 340, 390, 402
CviKI_1 RGCY 6 cut(s) 122, 146, 237, 340, 390, 402
CviQI GTAC 1 cut(s) 56
DpnI GATC 3 cut(s) 97, 180, 321
DpnII GATC 3 cut(s) 95, 178, 319
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 24, 171
FaiI YATR 5 cut(s) 22, 103, 169, 207, 359
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 90, 301
FatI CATG 2 cut(s) 20, 167
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 3 cut(s) 199, 328, 436
FokI GGATG 3 cut(s) 185, 222, 362
Fsp4HI GCNGC 3 cut(s) 199, 328, 436
FspBI CTAG 3 cut(s) 59, 240, 341
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 199, 328, 436
HaeIII GGCC 2 cut(s) 237, 402
HhaI GCGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 24, 171
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 2 cut(s) 415, 430
HindII GTYRAC 2 cut(s) 415, 430
HphI GGTGA 2 cut(s) 286, 319
Hpy166II GTNNAC 3 cut(s) 56, 415, 430
Hpy8I GTNNAC 3 cut(s) 56, 415, 430
Hpy99I CGWCG 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 91, 304, 383
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 17, 155, 218, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 264
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 2 cut(s) 24, 171
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 95, 178, 319
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 6 cut(s) 132, 219, 243, 270, 276, 384
Lsp1109I GCAGC 2 cut(s) 210, 339
LweI GCATC 2 cut(s) 163, 404
MaeI CTAG 3 cut(s) 59, 240, 341
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 274
MalI GATC 3 cut(s) 97, 180, 321
MboI GATC 3 cut(s) 95, 178, 319
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 130, 312, 369
MnlI CCTC 4 cut(s) 119, 241, 278, 329
MseI TTAA 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 152, 264
NcoI CCATGG 1 cut(s) 20
NdeII GATC 3 cut(s) 95, 178, 319
NlaIII CATG 2 cut(s) 24, 171
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 3 cut(s) 417, 426, 435
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 200, 329, 437
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 227, 236
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 199, 328, 436
Sau3AI GATC 3 cut(s) 95, 178, 319
Sau96I GGNCC 2 cut(s) 227, 236
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 111, 232, 255, 408
SfaNI GCATC 2 cut(s) 163, 404
SinI GGWCC 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 3 cut(s) 130, 312, 369
SsiI CCGC 5 cut(s) 142, 225, 243, 258, 435
SspMI CTAG 3 cut(s) 59, 240, 341
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 3 cut(s) 91, 304, 383
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 429
TaqII GACCGA 1 cut(s) 31
TasI AATT 3 cut(s) 130, 312, 369
TatI WGTACW 1 cut(s) 55
TauI GCSGC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 289, 309
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 198, 327
Tsp45I GTSAC 1 cut(s) 274
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 2 cut(s) 289, 309
VpaK11BI GGWCC 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 3 cut(s) 59, 240, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.